| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0712 |
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| Symbol | |
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| ID | 5611972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 858799 |
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| End bp | 859485 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931556 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001472451 |
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| Protein GI | 157373851 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0234002 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTAA CACAACTACT CATTGTCGAA GACAACCCGG ATGTGGCAGG TATACTTGCC
GACTTTTTTG AATCCCAGGG AACTGAGGTC GATTTTGCGG CTAATGGTGA GCTAGGCTAT
AAGCTCGCAC TCGATGGATG TTTCGATCTA ATCATCTTAG ATCTTATGCT GCCCAAGATG
GATGGTTTAA CCGTAGCCAA AAAGCTAAGA CAAATGGGCT GCACCACACC TATCCTCATG
TTAACGGCTC TGGATGATAA GCAAGATCTT TTAAATGGTT TTGCCTCAGG CGCCGATGAC
TACCTGGCAA AACCCTTCGA CTTAGATGTG CTCAACGCCA GAGTCACGGC CTTAATTAAC
CGGCATCAGG GGAAAGTCGC CCGAGGCGTA CTAAAATATG GCTCTCTTGA ACTCGATACC
GCAAAGCATC AGGTCTATCG CGGTGGTAAA AAGCTCGCGC TCACACCAGC CTGCTATCAA
ATTTTGCATT ATCTTATGCA TAAAGCACCC AATATCGTAA AACGAGAAGA GCTTATCGAT
GAGCTGTGGG GCGACACTCC GCCGAGTAAT GATATTTTAC GCAGCCATAT GTATCAGCTG
CGAAATCAGC TGGATAAACC TTTCGAAACC CCCATACTGA TCACCGTACC TAAGATAGGT
TTTAAACTTG AGCTAACGAG CAACTGA
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| Protein sequence | MALTQLLIVE DNPDVAGILA DFFESQGTEV DFAANGELGY KLALDGCFDL IILDLMLPKM
DGLTVAKKLR QMGCTTPILM LTALDDKQDL LNGFASGADD YLAKPFDLDV LNARVTALIN
RHQGKVARGV LKYGSLELDT AKHQVYRGGK KLALTPACYQ ILHYLMHKAP NIVKREELID
ELWGDTPPSN DILRSHMYQL RNQLDKPFET PILITVPKIG FKLELTSN
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