More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3566 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3566  LysR family transcriptional regulator  100 
 
 
332 aa  694    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3153  LysR family transcriptional regulator  59.88 
 
 
334 aa  428  1e-119  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2899  transcriptional regulator-like protein  60.92 
 
 
327 aa  426  1e-118  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3970  LysR family transcriptional regulator  38.44 
 
 
317 aa  243  3.9999999999999997e-63  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0237  LysR family transcriptional regulator  38.78 
 
 
323 aa  234  2.0000000000000002e-60  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0238  transcriptional regulator-like protein  35.14 
 
 
332 aa  209  5e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0512  transcriptional regulator-like protein  31.17 
 
 
314 aa  167  2.9999999999999998e-40  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3572  LysR family transcriptional regulator  28.62 
 
 
325 aa  102  1e-20  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0311  LysR family transcriptional regulator  27.17 
 
 
322 aa  98.2  2e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3839  LysR family transcriptional regulator  26.69 
 
 
322 aa  94.4  2e-18  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3766  LysR family transcriptional regulator  26.69 
 
 
322 aa  94.4  3e-18  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3964  LysR family transcriptional regulator  26.69 
 
 
322 aa  94.4  3e-18  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0238  LysR family transcriptional regulator  23.1 
 
 
321 aa  92.4  9e-18  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4287  LysR family transcriptional regulator  26.04 
 
 
322 aa  91.7  1e-17  Shewanella baltica OS195  Bacteria  normal  normal  0.128947 
 
 
-
 
NC_009052  Sbal_0179  LysR family transcriptional regulator  26.04 
 
 
322 aa  90.9  2e-17  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0180  transcriptional regulator, LysR family  26.04 
 
 
322 aa  91.3  2e-17  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3969  LysR family transcriptional regulator  24.43 
 
 
321 aa  89.7  6e-17  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2919  LysR family transcriptional regulator  25 
 
 
321 aa  87  4e-16  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2679  LysR family transcriptional regulator  27.94 
 
 
350 aa  84  0.000000000000003  Shewanella sp. MR-7  Bacteria  normal  0.245615  hitchhiker  0.000486304 
 
 
-
 
NC_009831  Ssed_3589  transcriptional regulator-like protein  26.26 
 
 
318 aa  84  0.000000000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2612  LysR family transcriptional regulator  27.94 
 
 
350 aa  83.6  0.000000000000004  Shewanella sp. MR-4  Bacteria  normal  0.13871  hitchhiker  0.00000334013 
 
 
-
 
NC_009438  Sputcn32_1381  LysR family transcriptional regulator  26.64 
 
 
324 aa  82.8  0.000000000000007  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2786  LysR family transcriptional regulator  27.46 
 
 
337 aa  81.6  0.00000000000002  Shewanella sp. ANA-3  Bacteria  normal  0.989304  hitchhiker  0.00367325 
 
 
-
 
NC_009831  Ssed_0239  LysR family transcriptional regulator  23.41 
 
 
321 aa  81.3  0.00000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2227  LysR family transcriptional regulator  26.11 
 
 
330 aa  80.9  0.00000000000003  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000157838  normal 
 
 
-
 
NC_009831  Ssed_3981  LysR family transcriptional regulator  22.9 
 
 
320 aa  80.5  0.00000000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1661  LysR family transcriptional regulator  26.23 
 
 
328 aa  80.1  0.00000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2072  LysR family transcriptional regulator  21.94 
 
 
305 aa  77  0.0000000000004  Shewanella sp. MR-4  Bacteria  normal  0.0341772  normal  0.872543 
 
 
-
 
NC_008322  Shewmr7_1903  LysR family transcriptional regulator  21.94 
 
 
305 aa  77  0.0000000000004  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3154  LysR family transcriptional regulator  25.74 
 
 
324 aa  74.7  0.000000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0912  transcriptional regulator, LysR family protein  26.99 
 
 
318 aa  73.9  0.000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  decreased coverage  0.000235744  n/a   
 
 
-
 
NC_009665  Shew185_1474  LysR family transcriptional regulator  27.42 
 
 
324 aa  73.6  0.000000000004  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000979777  n/a   
 
 
-
 
NC_009052  Sbal_1479  LysR family transcriptional regulator  27.42 
 
 
324 aa  73.6  0.000000000004  Shewanella baltica OS155  Bacteria  hitchhiker  0.000211446  n/a   
 
 
-
 
NC_009997  Sbal195_1510  LysR family transcriptional regulator  27.42 
 
 
324 aa  73.6  0.000000000004  Shewanella baltica OS195  Bacteria  decreased coverage  0.000904227  normal 
 
 
-
 
NC_009831  Ssed_4210  LysR family transcriptional regulator  25.25 
 
 
335 aa  73.6  0.000000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0243  LysR family transcriptional regulator  24.87 
 
 
321 aa  73.2  0.000000000005  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0997  LysR family transcriptional regulator  23.14 
 
 
321 aa  73.2  0.000000000005  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3590  transcriptional regulator-like protein  27.12 
 
 
316 aa  72.8  0.000000000007  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3500  LysR family transcriptional regulator  30.35 
 
 
313 aa  72.8  0.000000000007  Shewanella putrefaciens CN-32  Bacteria  normal  0.0910886  n/a   
 
 
-
 
NC_011663  Sbal223_2873  transcriptional regulator, LysR family  27.42 
 
 
324 aa  73.2  0.000000000007  Shewanella baltica OS223  Bacteria  hitchhiker  0.00000342278  hitchhiker  0.00000105997 
 
 
-
 
NC_009052  Sbal_0214  LysR family transcriptional regulator  29.76 
 
 
313 aa  72.8  0.000000000008  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000152565  n/a   
 
 
-
 
NC_011663  Sbal223_0216  transcriptional regulator, LysR family  32.43 
 
 
313 aa  71.6  0.00000000002  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000946054  normal  0.293728 
 
 
-
 
NC_009665  Shew185_4123  LysR family transcriptional regulator  29.85 
 
 
313 aa  71.6  0.00000000002  Shewanella baltica OS185  Bacteria  hitchhiker  0.000527418  n/a   
 
 
-
 
NC_004578  PSPTO_3547  transcriptional regulator, LysR family  25.59 
 
 
311 aa  71.6  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.570181  n/a   
 
 
-
 
NC_009997  Sbal195_4244  LysR family transcriptional regulator  29.85 
 
 
313 aa  71.6  0.00000000002  Shewanella baltica OS195  Bacteria  unclonable  0.000000170817  hitchhiker  0.00215615 
 
 
-
 
NC_008700  Sama_2900  hypothetical protein  26.24 
 
 
324 aa  70.9  0.00000000003  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0917  LysR family transcriptional regulator  22.65 
 
 
321 aa  70.5  0.00000000004  Shewanella loihica PV-4  Bacteria  normal  0.0292456  normal  0.707414 
 
 
-
 
NC_008577  Shewana3_3932  transcriptional regulator  28.85 
 
 
311 aa  69.7  0.00000000006  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00420556  normal 
 
 
-
 
NC_010552  BamMC406_3156  LysR family transcriptional regulator  25.19 
 
 
308 aa  69.7  0.00000000007  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3734  LysR family transcriptional regulator  28.85 
 
 
311 aa  69.3  0.00000000008  Shewanella sp. MR-4  Bacteria  normal  normal  0.457361 
 
 
-
 
NC_008463  PA14_68550  LysR family transcriptional regulator  25.1 
 
 
302 aa  69.3  0.00000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.505107 
 
 
-
 
NC_008322  Shewmr7_3805  LysR family transcriptional regulator  28.85 
 
 
311 aa  69.3  0.00000000009  Shewanella sp. MR-7  Bacteria  normal  0.829403  normal 
 
 
-
 
NC_009831  Ssed_0520  LysR family transcriptional regulator  22.73 
 
 
321 aa  68.9  0.0000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3242  LysR family transcriptional regulator  25.13 
 
 
320 aa  68.9  0.0000000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0195  LysR family transcriptional regulator  25 
 
 
323 aa  67.8  0.0000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2551  LysR family transcriptional regulator  23.86 
 
 
320 aa  68.2  0.0000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3751  LysR family transcriptional regulator  24.33 
 
 
319 aa  68.2  0.0000000002  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3824  LysR family transcriptional regulator  24.33 
 
 
319 aa  68.2  0.0000000002  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4139  LysR family transcriptional regulator  25 
 
 
323 aa  68.2  0.0000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0195  transcriptional regulator, LysR family  24.15 
 
 
323 aa  67.4  0.0000000003  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3657  LysR family transcriptional regulator  23.35 
 
 
320 aa  67.4  0.0000000003  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0288  LysR family transcriptional regulator  23.35 
 
 
320 aa  67.4  0.0000000003  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5015  LysR family transcriptional regulator  24.81 
 
 
308 aa  67.4  0.0000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.357265  normal 
 
 
-
 
NC_010506  Swoo_0253  LysR family transcriptional regulator  25.27 
 
 
318 aa  67  0.0000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.88055 
 
 
-
 
NC_008577  Shewana3_3949  LysR family transcriptional regulator  24.33 
 
 
319 aa  67  0.0000000004  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0253  LysR family transcriptional regulator  24.15 
 
 
320 aa  67.4  0.0000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5932  putative transcriptional regulator  23.75 
 
 
302 aa  66.6  0.0000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0324  LysR family transcriptional regulator  28.4 
 
 
323 aa  66.2  0.0000000006  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6977  LysR family transcriptional regulator  28.86 
 
 
324 aa  66.6  0.0000000006  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3957  LysR family transcriptional regulator  24.26 
 
 
322 aa  66.6  0.0000000006  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4272  LysR family transcriptional regulator  25 
 
 
323 aa  66.6  0.0000000006  Shewanella baltica OS195  Bacteria  normal  normal  0.0731118 
 
 
-
 
NC_009901  Spea_3428  LysR family transcriptional regulator  23.81 
 
 
303 aa  66.2  0.0000000006  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000186024  n/a   
 
 
-
 
NC_008463  PA14_21080  LysR family transcriptional activator  25.52 
 
 
304 aa  66.2  0.0000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3571  LysR family transcriptional regulator  23.55 
 
 
316 aa  65.9  0.0000000009  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4479  LysR family transcriptional regulator  24.42 
 
 
308 aa  65.9  0.0000000009  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3495  regulatory protein, LysR  28.5 
 
 
322 aa  65.9  0.0000000009  Shewanella denitrificans OS217  Bacteria  normal  0.268712  n/a   
 
 
-
 
NC_009831  Ssed_3565  LysR family transcriptional regulator  23.92 
 
 
326 aa  65.9  0.0000000009  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0296  transcriptional regulator, LysR family protein  28.5 
 
 
327 aa  65.9  0.0000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.35272  n/a   
 
 
-
 
NC_009092  Shew_3589  LysR family transcriptional regulator  24.91 
 
 
330 aa  65.5  0.000000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4525.1  LysR family transcriptional regulator  28.37 
 
 
243 aa  65.1  0.000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_1799  putative transcriptional regulator  25.1 
 
 
304 aa  65.9  0.000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B3131  LysR family transcriptional regulator  24.81 
 
 
308 aa  65.9  0.000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2618  LysR family transcriptional regulator  22.4 
 
 
306 aa  65.9  0.000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4556  LysR family transcriptional regulator  28.4 
 
 
321 aa  64.7  0.000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010623  Bphy_4455  LysR family transcriptional regulator  23.08 
 
 
307 aa  64.7  0.000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.326178 
 
 
-
 
NC_013456  VEA_002079  LysR-family transcriptional regulator  26.63 
 
 
313 aa  64.3  0.000000003  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0642  LysR family transcriptional regulator  22.64 
 
 
309 aa  64.3  0.000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.915851  normal  0.108834 
 
 
-
 
NC_007973  Rmet_2977  LysR family transcriptional regulator  25.1 
 
 
333 aa  64.3  0.000000003  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0820  transcriptional regulator, LysR family  28.15 
 
 
310 aa  64.3  0.000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.24868  normal 
 
 
-
 
NC_010676  Bphyt_4311  transcriptional regulator, LysR family  21.96 
 
 
309 aa  64.3  0.000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.386764  normal  0.967846 
 
 
-
 
NC_008061  Bcen_5115  LysR family transcriptional regulator  24.71 
 
 
308 aa  63.9  0.000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.337357  n/a   
 
 
-
 
NC_008543  Bcen2424_5744  LysR family transcriptional regulator  24.71 
 
 
308 aa  63.9  0.000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.205378 
 
 
-
 
NC_010086  Bmul_5290  LysR family transcriptional regulator  25.28 
 
 
327 aa  63.5  0.000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3321  helix-turn-helix, Fis-type  25.66 
 
 
311 aa  63.2  0.000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.270973 
 
 
-
 
NC_013457  VEA_000892  transcriptional regulators LysR family  24.39 
 
 
304 aa  63.2  0.000000006  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1485  LysR family transcriptional regulator  22.76 
 
 
314 aa  62.8  0.000000008  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.397513  normal 
 
 
-
 
NC_007347  Reut_A2838  regulatory protein, LysR:LysR, substrate-binding  23.66 
 
 
328 aa  62.8  0.000000008  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2748  transcription regulator protein  26.63 
 
 
347 aa  62.4  0.000000009  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3874  LysR family transcriptional regulator  24.9 
 
 
323 aa  61.2  0.00000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_2987  transcriptional regulator, LysR family  24.12 
 
 
347 aa  60.8  0.00000003  Ralstonia pickettii 12J  Bacteria  normal  0.217571  normal 
 
 
-
 
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