| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3242 |
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| Symbol | |
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| ID | 4921526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3876957 |
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| End bp | 3877919 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640164852 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095367 |
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| Protein GI | 127514170 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTG ATAAACTCGA TTATCATTCG CTGATCATTT TCGAATCCAT CAGTCGTCAC
TTGAATGCAG GCCTGGTCGC CAATGAGCTG GGGATGAGCA TCTCTTCGGT CAGCCGTCAC
CTTGGCATAC TGCGCGATAT CTTTAAGGAC GTACTCTTCA TCCGCCGGGC ACAAGGGTTT
GTCTTATCAG ACAAAGCCAT ACAACTCCTG CCTTACATCA AGCAGTTGCT CCATGACTAT
CAGGTGATCA AACACAACCA TATTCATTTC AATCCGCTCA CCGCCCGGGG CCACTTTAAG
ATCTACGCCT ATAACGAATT CACCTATGTG ATCAACAAGG TGATTCATCA ATATATATTG
CCTCAGGCGC CTAATTTAAC CTTCGAGGTG CGCACCCTCT CCAGCGACTG TAGCCGCGCC
ATAGAACATG GCGAGATTGA CTTTGCCGTC GTCTACGAAA GGTTTAAAGA TCACAAGATC
ATCTGTGAGA TGTTTTCCCC CACCGAGGAG CTGTTTTTAA TCGCCAAGGA GGGACATGCG
GTATTTGAAG ATGAATTTAC CTTGGCCAAC TTATGCCAAT ATGATTATTT CGCCCTGGAT
AATTATAACG ATCTGCCCAT GCCGCTACTG GAACAACTGG GTAAGACGGA AGGCAAGGCG
GTTAACGTGC TCGGTGCCAC AGACAATATC GCCGCCCTGA GCCGTCATAT TCTCGATGGA
CGCGCCATCT CCATGAGCTG TAACGTCTTC ACCCGCGAGT TTTATTCGCT GATCAAGGGA
ATACGAACCG CCACACTACC AAGCGCTCTC ACCGAACGCC TACTCAAGCA GATCACCGTT
GGTCGCACGG TCGGCAATTA CCTCATCTAC TCGGAGATCA ACCAGTCTCC CACCCACCAC
TGGCTCAAGC AGCAGCTATT TAACGGCATA CGTGATGAGT GGTATCTGGC CATGGGCCGC
TAA
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| Protein sequence | MNIDKLDYHS LIIFESISRH LNAGLVANEL GMSISSVSRH LGILRDIFKD VLFIRRAQGF
VLSDKAIQLL PYIKQLLHDY QVIKHNHIHF NPLTARGHFK IYAYNEFTYV INKVIHQYIL
PQAPNLTFEV RTLSSDCSRA IEHGEIDFAV VYERFKDHKI ICEMFSPTEE LFLIAKEGHA
VFEDEFTLAN LCQYDYFALD NYNDLPMPLL EQLGKTEGKA VNVLGATDNI AALSRHILDG
RAISMSCNVF TREFYSLIKG IRTATLPSAL TERLLKQITV GRTVGNYLIY SEINQSPTHH
WLKQQLFNGI RDEWYLAMGR
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