More than 300 homologs were found in PanDaTox collection
for query gene Ssed_0239 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_0239  LysR family transcriptional regulator  100 
 
 
321 aa  658    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3969  LysR family transcriptional regulator  67.29 
 
 
321 aa  474  1e-133  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0238  LysR family transcriptional regulator  62.31 
 
 
321 aa  439  9.999999999999999e-123  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0520  LysR family transcriptional regulator  53.27 
 
 
321 aa  356  2.9999999999999997e-97  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3964  LysR family transcriptional regulator  46.47 
 
 
322 aa  313  2.9999999999999996e-84  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3766  LysR family transcriptional regulator  46.47 
 
 
322 aa  313  3.9999999999999997e-84  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3839  LysR family transcriptional regulator  46.62 
 
 
322 aa  312  5.999999999999999e-84  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0311  LysR family transcriptional regulator  47.77 
 
 
322 aa  310  2e-83  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4287  LysR family transcriptional regulator  46.62 
 
 
322 aa  307  1.0000000000000001e-82  Shewanella baltica OS195  Bacteria  normal  normal  0.128947 
 
 
-
 
NC_011663  Sbal223_0180  transcriptional regulator, LysR family  46.3 
 
 
322 aa  305  6e-82  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0179  LysR family transcriptional regulator  46.3 
 
 
322 aa  304  1.0000000000000001e-81  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3565  LysR family transcriptional regulator  44.38 
 
 
326 aa  281  1e-74  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0617  transcriptional regulator, LysR family protein  43.57 
 
 
319 aa  265  8.999999999999999e-70  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.468918  n/a   
 
 
-
 
NC_008700  Sama_2900  hypothetical protein  35.58 
 
 
324 aa  226  5.0000000000000005e-58  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3154  LysR family transcriptional regulator  35.58 
 
 
324 aa  219  3.9999999999999997e-56  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4571  LysR family transcriptional regulator  27.52 
 
 
319 aa  122  6e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3589  transcriptional regulator-like protein  29.15 
 
 
318 aa  112  1.0000000000000001e-23  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0917  LysR family transcriptional regulator  27.33 
 
 
321 aa  101  2e-20  Shewanella loihica PV-4  Bacteria  normal  0.0292456  normal  0.707414 
 
 
-
 
NC_010506  Swoo_0237  LysR family transcriptional regulator  23.2 
 
 
323 aa  97.8  2e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2899  transcriptional regulator-like protein  26.51 
 
 
327 aa  97.4  3e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2873  transcriptional regulator, LysR family  25.25 
 
 
324 aa  93.6  4e-18  Shewanella baltica OS223  Bacteria  hitchhiker  0.00000342278  hitchhiker  0.00000105997 
 
 
-
 
NC_009901  Spea_3970  LysR family transcriptional regulator  23.15 
 
 
317 aa  92.8  6e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1479  LysR family transcriptional regulator  25.25 
 
 
324 aa  92.8  7e-18  Shewanella baltica OS155  Bacteria  hitchhiker  0.000211446  n/a   
 
 
-
 
NC_009997  Sbal195_1510  LysR family transcriptional regulator  25.25 
 
 
324 aa  92.8  7e-18  Shewanella baltica OS195  Bacteria  decreased coverage  0.000904227  normal 
 
 
-
 
NC_009665  Shew185_1474  LysR family transcriptional regulator  25.25 
 
 
324 aa  92.8  7e-18  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000979777  n/a   
 
 
-
 
NC_009831  Ssed_0512  transcriptional regulator-like protein  31.43 
 
 
314 aa  91.7  2e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3153  LysR family transcriptional regulator  26.51 
 
 
334 aa  91.7  2e-17  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0238  transcriptional regulator-like protein  25.31 
 
 
332 aa  90.9  3e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1381  LysR family transcriptional regulator  26.58 
 
 
324 aa  90.1  4e-17  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3657  LysR family transcriptional regulator  21.29 
 
 
320 aa  90.1  4e-17  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0997  LysR family transcriptional regulator  25 
 
 
321 aa  89.7  6e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0288  LysR family transcriptional regulator  21.29 
 
 
320 aa  89.4  7e-17  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2551  LysR family transcriptional regulator  25.73 
 
 
320 aa  87.8  2e-16  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2227  LysR family transcriptional regulator  25.91 
 
 
330 aa  87.4  3e-16  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000157838  normal 
 
 
-
 
NC_009901  Spea_3572  LysR family transcriptional regulator  25.57 
 
 
325 aa  85.9  8e-16  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2786  LysR family transcriptional regulator  25.25 
 
 
337 aa  85.5  0.000000000000001  Shewanella sp. ANA-3  Bacteria  normal  0.989304  hitchhiker  0.00367325 
 
 
-
 
NC_004347  SO_1661  LysR family transcriptional regulator  25.59 
 
 
328 aa  84.3  0.000000000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_4210  LysR family transcriptional regulator  26.83 
 
 
335 aa  83.6  0.000000000000005  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3590  transcriptional regulator-like protein  23.57 
 
 
316 aa  81.6  0.00000000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2919  LysR family transcriptional regulator  23.73 
 
 
321 aa  82  0.00000000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0243  LysR family transcriptional regulator  27.59 
 
 
321 aa  81.3  0.00000000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3566  LysR family transcriptional regulator  23.41 
 
 
332 aa  81.3  0.00000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2612  LysR family transcriptional regulator  24.83 
 
 
350 aa  80.1  0.00000000000005  Shewanella sp. MR-4  Bacteria  normal  0.13871  hitchhiker  0.00000334013 
 
 
-
 
NC_008322  Shewmr7_2679  LysR family transcriptional regulator  24.83 
 
 
350 aa  80.1  0.00000000000005  Shewanella sp. MR-7  Bacteria  normal  0.245615  hitchhiker  0.000486304 
 
 
-
 
NC_009901  Spea_3571  LysR family transcriptional regulator  23.66 
 
 
316 aa  79.3  0.00000000000008  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0912  transcriptional regulator, LysR family protein  24.57 
 
 
318 aa  73.6  0.000000000004  Shewanella frigidimarina NCIMB 400  Bacteria  decreased coverage  0.000235744  n/a   
 
 
-
 
NC_009654  Mmwyl1_3666  LysR family transcriptional regulator  29.41 
 
 
326 aa  73.2  0.000000000005  Marinomonas sp. MWYL1  Bacteria  normal  0.0496532  normal 
 
 
-
 
NC_003296  RS01658  transcriptional regulator transcription regulator protein  20.57 
 
 
308 aa  71.6  0.00000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  0.121304  normal 
 
 
-
 
NC_007641  Rru_B0017  LysR family transcriptional regulator  22.87 
 
 
301 aa  70.5  0.00000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3981  LysR family transcriptional regulator  22.65 
 
 
320 aa  70.5  0.00000000004  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2311  LysR family transcriptional regulator  21.2 
 
 
316 aa  69.7  0.00000000007  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00615396  normal 
 
 
-
 
NC_007925  RPC_3501  LysR family transcriptional regulator  22.83 
 
 
301 aa  67.8  0.0000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.356591  normal 
 
 
-
 
NC_009901  Spea_3428  LysR family transcriptional regulator  23.34 
 
 
303 aa  68.2  0.0000000002  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000186024  n/a   
 
 
-
 
NC_010322  PputGB1_3365  LysR family transcriptional regulator  20.06 
 
 
314 aa  67.8  0.0000000002  Pseudomonas putida GB-1  Bacteria  normal  0.599311  normal  0.494502 
 
 
-
 
NC_013457  VEA_000302  transcriptional regulator LysR family  23.57 
 
 
301 aa  67.8  0.0000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3242  LysR family transcriptional regulator  21.79 
 
 
320 aa  67.4  0.0000000003  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0044  LysR family transcriptional regulator  22.01 
 
 
307 aa  66.2  0.0000000007  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6114  transcriptional regulator, LysR family  20.77 
 
 
316 aa  66.2  0.0000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  0.689302  normal 
 
 
-
 
NC_007413  Ava_2802  LysR family transcriptional regulator  27.72 
 
 
305 aa  64.3  0.000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2222  LysR family transcriptional regulator  19.61 
 
 
314 aa  64.3  0.000000003  Pseudomonas putida W619  Bacteria  normal  0.176511  normal 
 
 
-
 
NC_003910  CPS_1231  LysR family transcriptional regulator  28.67 
 
 
315 aa  63.5  0.000000005  Colwellia psychrerythraea 34H  Bacteria  normal  0.864061  n/a   
 
 
-
 
NC_009079  BMA10247_A0054  LysR family transcriptional regulator  21.7 
 
 
307 aa  63.2  0.000000007  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0044  LysR family transcriptional regulator  21.7 
 
 
307 aa  63.2  0.000000007  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1550  LysR family transcriptional regulator  21.7 
 
 
307 aa  63.2  0.000000007  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1481  LysR family transcriptional regulator  21.07 
 
 
308 aa  62.8  0.000000007  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0052  LysR family transcriptional regulator  21.7 
 
 
307 aa  63.2  0.000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1198  LysR family transcriptional regulator  21.7 
 
 
307 aa  63.2  0.000000007  Burkholderia mallei SAVP1  Bacteria  normal  0.601339  n/a   
 
 
-
 
NC_010002  Daci_3329  LysR family transcriptional regulator  21.36 
 
 
323 aa  62.8  0.000000008  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195009 
 
 
-
 
NC_009075  BURPS668_A0065  LysR family transcriptional regulator  21.7 
 
 
307 aa  62.4  0.00000001  Burkholderia pseudomallei 668  Bacteria  normal  0.363781  n/a   
 
 
-
 
NC_009438  Sputcn32_3500  LysR family transcriptional regulator  26.79 
 
 
313 aa  62  0.00000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.0910886  n/a   
 
 
-
 
NC_009784  VIBHAR_05276  transcriptional regulator  24.32 
 
 
313 aa  62  0.00000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008538  Arth_4269  LysR family transcriptional regulator  24.36 
 
 
301 aa  62.4  0.00000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4525.1  LysR family transcriptional regulator  25.32 
 
 
243 aa  61.2  0.00000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_4244  LysR family transcriptional regulator  25.84 
 
 
313 aa  61.2  0.00000002  Shewanella baltica OS195  Bacteria  unclonable  0.000000170817  hitchhiker  0.00215615 
 
 
-
 
NC_010506  Swoo_0274  LysR family transcriptional regulator  24.42 
 
 
306 aa  61.6  0.00000002  Shewanella woodyi ATCC 51908  Bacteria  normal  unclonable  0.0000000255624 
 
 
-
 
NC_011663  Sbal223_0216  transcriptional regulator, LysR family  25.84 
 
 
313 aa  61.6  0.00000002  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000946054  normal  0.293728 
 
 
-
 
NC_009665  Shew185_4123  LysR family transcriptional regulator  25.84 
 
 
313 aa  61.2  0.00000002  Shewanella baltica OS185  Bacteria  hitchhiker  0.000527418  n/a   
 
 
-
 
NC_009832  Spro_2994  LysR family transcriptional regulator  24.03 
 
 
310 aa  61.6  0.00000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0214  LysR family transcriptional regulator  25.7 
 
 
313 aa  61.2  0.00000002  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000152565  n/a   
 
 
-
 
NC_009654  Mmwyl1_1311  LysR family transcriptional regulator  22.22 
 
 
321 aa  60.5  0.00000003  Marinomonas sp. MWYL1  Bacteria  normal  0.20499  normal  0.840284 
 
 
-
 
NC_008709  Ping_1036  transcriptional regulator of LysR family protein  25.12 
 
 
313 aa  60.5  0.00000004  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2677  LysR family transcriptional regulator  25.64 
 
 
314 aa  60.5  0.00000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.297592  normal 
 
 
-
 
NC_007963  Csal_0307  LysR family transcriptional regulator  23.46 
 
 
308 aa  60.5  0.00000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.291876  n/a   
 
 
-
 
NC_008228  Patl_1878  LysR family transcriptional regulator  20.32 
 
 
305 aa  60.5  0.00000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3874  LysR family transcriptional regulator  22.57 
 
 
323 aa  60.1  0.00000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_2551  LysR family transcriptional regulator  19.17 
 
 
314 aa  59.7  0.00000006  Pseudomonas putida KT2440  Bacteria  normal  0.521467  decreased coverage  0.00635729 
 
 
-
 
NC_003295  RSc1092  transcriptional regulatory DNA-binding transcription regulator protein  24.53 
 
 
300 aa  60.1  0.00000006  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3734  LysR family transcriptional regulator  25.49 
 
 
311 aa  59.7  0.00000007  Shewanella sp. MR-4  Bacteria  normal  normal  0.457361 
 
 
-
 
NC_008322  Shewmr7_3805  LysR family transcriptional regulator  25.49 
 
 
311 aa  59.7  0.00000007  Shewanella sp. MR-7  Bacteria  normal  0.829403  normal 
 
 
-
 
NC_009074  BURPS668_3150  LysR family transcriptional regulator  23.59 
 
 
315 aa  59.3  0.00000008  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3205  LysR family regulatory protein  23.59 
 
 
315 aa  59.3  0.00000008  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3189  transcriptional regulator  23.59 
 
 
315 aa  59.3  0.00000008  Burkholderia pseudomallei 1106a  Bacteria  normal  0.576069  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0882  LysR family transcriptional regulator  23.59 
 
 
315 aa  59.3  0.00000008  Burkholderia mallei SAVP1  Bacteria  normal  0.493693  n/a   
 
 
-
 
NC_009080  BMA10247_1894  LysR family transcriptional regulator  23.59 
 
 
315 aa  59.3  0.00000008  Burkholderia mallei NCTC 10247  Bacteria  normal  0.534737  n/a   
 
 
-
 
NC_008836  BMA10229_A2716  LysR family transcriptional regulator  23.59 
 
 
315 aa  59.3  0.00000008  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1118  LysR family transcriptional regulator  20.31 
 
 
305 aa  58.9  0.0000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3932  transcriptional regulator  25.49 
 
 
311 aa  58.9  0.0000001  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00420556  normal 
 
 
-
 
NC_007577  PMT9312_0149  putative Rubisco transcriptional regulator  25 
 
 
319 aa  58.9  0.0000001  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1416  LysR family transcriptional regulator  22.73 
 
 
315 aa  58.5  0.0000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0796  transcriptional regulator, LysR family  21.74 
 
 
326 aa  58.5  0.0000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.473428  normal  0.137552 
 
 
-
 
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