More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_3611 on replicon NC_009429
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009429  Rsph17025_3611  hypothetical protein  100 
 
 
278 aa  550  1e-155  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1230  CRP/FNR family transcriptional regulator  36 
 
 
263 aa  98.2  1e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2572  crpK, Fnr-type transcriptional regulator  36 
 
 
263 aa  98.2  1e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  34.22 
 
 
263 aa  96.3  5e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  31.52 
 
 
262 aa  94.7  1e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  29.41 
 
 
241 aa  92.8  6e-18  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  32.65 
 
 
249 aa  90.5  2e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  30.1 
 
 
242 aa  90.5  3e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  29.41 
 
 
240 aa  88.2  1e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  33.33 
 
 
258 aa  88.2  1e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  29.44 
 
 
237 aa  87.8  2e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  30.59 
 
 
231 aa  87.4  2e-16  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  31.07 
 
 
248 aa  85.5  8e-16  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  32.22 
 
 
222 aa  84.7  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  33.52 
 
 
253 aa  84  0.000000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  28.87 
 
 
239 aa  83.6  0.000000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  31.07 
 
 
251 aa  83.6  0.000000000000004  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007406  Nwi_2061  Crp family transcriptional regulator  27.57 
 
 
241 aa  83.6  0.000000000000004  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00300081  normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  33.85 
 
 
226 aa  83.2  0.000000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  27.7 
 
 
240 aa  82.4  0.000000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  28.42 
 
 
232 aa  82.4  0.000000000000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  30.93 
 
 
246 aa  80.1  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  28.71 
 
 
230 aa  79.7  0.00000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  27.6 
 
 
239 aa  79.3  0.00000000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  26.94 
 
 
239 aa  79  0.00000000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  27.46 
 
 
239 aa  79.3  0.00000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  30.06 
 
 
236 aa  79  0.00000000000009  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009671  Oant_4644  CRP/FNR family transcriptional regulator  27.33 
 
 
232 aa  78.6  0.0000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  28.49 
 
 
231 aa  77.4  0.0000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  31.86 
 
 
254 aa  77.8  0.0000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  27.83 
 
 
238 aa  77.8  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  27.83 
 
 
238 aa  77.8  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  29.17 
 
 
231 aa  77.8  0.0000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  31.82 
 
 
250 aa  77  0.0000000000003  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_009429  Rsph17025_3610  hypothetical protein  30.73 
 
 
231 aa  77  0.0000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  29.26 
 
 
242 aa  76.6  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  27.75 
 
 
241 aa  76.6  0.0000000000004  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  28.72 
 
 
220 aa  76.3  0.0000000000005  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  31.82 
 
 
250 aa  76.6  0.0000000000005  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  28.72 
 
 
204 aa  76.3  0.0000000000005  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  31.14 
 
 
211 aa  75.1  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  29.78 
 
 
245 aa  74.7  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  27.4 
 
 
234 aa  74.3  0.000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  29.57 
 
 
227 aa  73.9  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  26.83 
 
 
257 aa  74.3  0.000000000002  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  33.5 
 
 
317 aa  73.6  0.000000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  29.29 
 
 
227 aa  73.2  0.000000000005  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  27.55 
 
 
249 aa  72.4  0.000000000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  26.34 
 
 
229 aa  72.4  0.000000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  33 
 
 
299 aa  72.4  0.000000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  26.34 
 
 
229 aa  72.4  0.000000000007  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  27.72 
 
 
215 aa  72  0.00000000001  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  26.74 
 
 
235 aa  72  0.00000000001  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  27.86 
 
 
248 aa  70.9  0.00000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  27.59 
 
 
244 aa  70.9  0.00000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  28.63 
 
 
247 aa  70.5  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  27.68 
 
 
242 aa  70.5  0.00000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  26.87 
 
 
248 aa  70.1  0.00000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  26.87 
 
 
248 aa  70.1  0.00000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  25 
 
 
228 aa  69.3  0.00000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  31.53 
 
 
298 aa  69.3  0.00000000007  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  27.87 
 
 
250 aa  68.9  0.00000000009  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  68.2  0.0000000002  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  27.87 
 
 
250 aa  68.2  0.0000000002  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
249 aa  67.4  0.0000000002  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  27.87 
 
 
250 aa  68.2  0.0000000002  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  27.42 
 
 
242 aa  67.8  0.0000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  27.87 
 
 
250 aa  68.2  0.0000000002  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  68.2  0.0000000002  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  27.87 
 
 
250 aa  68.2  0.0000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  27.87 
 
 
250 aa  68.2  0.0000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  67.4  0.0000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  28.33 
 
 
242 aa  67.4  0.0000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_007348  Reut_B4212  cyclic nucleotide-binding: regulatory protein, Crp  26.88 
 
 
303 aa  67.4  0.0000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  25.77 
 
 
230 aa  67  0.0000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  29.32 
 
 
243 aa  66.6  0.0000000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  27.18 
 
 
248 aa  66.6  0.0000000004  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  67  0.0000000004  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  26.79 
 
 
250 aa  66.6  0.0000000004  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  26.92 
 
 
249 aa  67  0.0000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  66.6  0.0000000005  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  28.49 
 
 
310 aa  66.2  0.0000000006  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  26.78 
 
 
252 aa  66.2  0.0000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  23.12 
 
 
269 aa  65.5  0.0000000008  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  26.78 
 
 
249 aa  65.5  0.0000000008  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  27.84 
 
 
236 aa  65.5  0.0000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  26.55 
 
 
249 aa  65.1  0.000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  26.88 
 
 
242 aa  65.1  0.000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  29.22 
 
 
230 aa  65.1  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  28.09 
 
 
262 aa  65.5  0.000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  26.55 
 
 
249 aa  65.1  0.000000001  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
250 aa  65.1  0.000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
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