More than 300 homologs were found in PanDaTox collection
for query gene Psyr_3459 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  76.22 
 
 
470 aa  721    Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  76.55 
 
 
451 aa  710    Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  78.2 
 
 
458 aa  740    Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  93.63 
 
 
471 aa  864    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  100 
 
 
471 aa  947    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  82.38 
 
 
463 aa  773    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  76.55 
 
 
451 aa  717    Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  75.69 
 
 
473 aa  694    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  76.33 
 
 
451 aa  709    Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  76.6 
 
 
470 aa  699    Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  60.21 
 
 
481 aa  563  1.0000000000000001e-159  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  55.19 
 
 
497 aa  509  1e-143  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  55.29 
 
 
448 aa  499  1e-140  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  54.39 
 
 
469 aa  488  1e-137  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  54.08 
 
 
447 aa  483  1e-135  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  52.94 
 
 
478 aa  484  1e-135  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  54.41 
 
 
452 aa  478  1e-134  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  53.56 
 
 
445 aa  476  1e-133  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  53.73 
 
 
479 aa  478  1e-133  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  55.82 
 
 
449 aa  475  1e-133  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  55.27 
 
 
446 aa  473  1e-132  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  54.08 
 
 
446 aa  473  1e-132  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  56.25 
 
 
447 aa  473  1e-132  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  56.03 
 
 
447 aa  471  1e-132  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  56.25 
 
 
447 aa  473  1e-132  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  56.03 
 
 
447 aa  471  1.0000000000000001e-131  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  55.41 
 
 
446 aa  469  1.0000000000000001e-131  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  53.49 
 
 
469 aa  471  1.0000000000000001e-131  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  54 
 
 
452 aa  468  1.0000000000000001e-131  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  55.17 
 
 
446 aa  469  1.0000000000000001e-131  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1726  hypothetical protein  52.16 
 
 
437 aa  465  9.999999999999999e-131  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  55.39 
 
 
473 aa  466  9.999999999999999e-131  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  55.17 
 
 
446 aa  468  9.999999999999999e-131  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  54.96 
 
 
446 aa  468  9.999999999999999e-131  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  52.38 
 
 
437 aa  464  1e-129  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  54.96 
 
 
446 aa  461  1e-129  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  53.76 
 
 
447 aa  459  9.999999999999999e-129  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_007298  Daro_0775  helix-turn-helix, Fis-type  54.03 
 
 
457 aa  459  9.999999999999999e-129  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  53 
 
 
450 aa  460  9.999999999999999e-129  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  51.5 
 
 
446 aa  457  1e-127  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  51.5 
 
 
459 aa  451  1.0000000000000001e-126  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  50.43 
 
 
449 aa  423  1e-117  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  50.98 
 
 
455 aa  392  1e-108  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  44.97 
 
 
444 aa  360  2e-98  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_3661  sigma-54 factor, interaction region  52.22 
 
 
434 aa  358  8e-98  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  43.78 
 
 
443 aa  357  1.9999999999999998e-97  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3478  sigma-54 dependent trancsriptional regulator  49.87 
 
 
436 aa  353  2.9999999999999997e-96  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  46.34 
 
 
469 aa  353  2.9999999999999997e-96  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  51.35 
 
 
476 aa  352  1e-95  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3981  sigma-54 dependent trancsriptional regulator  49.75 
 
 
433 aa  350  4e-95  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0079  sigma-54 dependent trancsriptional regulator  44.35 
 
 
433 aa  348  1e-94  Shewanella sediminis HAW-EB3  Bacteria  normal  0.819278  normal 
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  43.04 
 
 
457 aa  345  1e-93  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  44.28 
 
 
458 aa  344  2.9999999999999997e-93  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4419  two component, sigma54 specific, Fis family transcriptional regulator  48.41 
 
 
469 aa  343  5e-93  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.475055 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41.83 
 
 
457 aa  342  5.999999999999999e-93  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  44.47 
 
 
447 aa  340  4e-92  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_009901  Spea_0085  sigma-54 dependent trancsriptional regulator  49.87 
 
 
435 aa  340  5e-92  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  42.43 
 
 
457 aa  339  7e-92  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  45.41 
 
 
453 aa  338  9.999999999999999e-92  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  45 
 
 
478 aa  336  5.999999999999999e-91  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  41.42 
 
 
461 aa  335  7e-91  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.2 
 
 
461 aa  335  1e-90  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.2 
 
 
461 aa  334  2e-90  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.2 
 
 
461 aa  334  2e-90  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.2 
 
 
461 aa  334  2e-90  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.2 
 
 
461 aa  334  2e-90  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  46.6 
 
 
459 aa  334  2e-90  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  40.38 
 
 
473 aa  332  7.000000000000001e-90  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2853  two component, sigma54 specific, Fis family transcriptional regulator  40.2 
 
 
476 aa  331  1e-89  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  45.79 
 
 
453 aa  331  2e-89  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_011891  A2cp1_4406  two component, sigma54 specific, transcriptional regulator, Fis family  42.19 
 
 
483 aa  331  2e-89  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.378923  n/a   
 
 
-
 
NC_010159  YpAngola_A0236  sigma-54 transcriptional regulatory protein  48.26 
 
 
342 aa  330  3e-89  Yersinia pestis Angola  Bacteria  normal  0.143809  normal  0.138456 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  39.5 
 
 
470 aa  330  3e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
473 aa  330  3e-89  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_010465  YPK_0709  sigma-54 dependent trancsriptional regulator  48.26 
 
 
342 aa  330  3e-89  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.821581  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
473 aa  330  3e-89  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011145  AnaeK_4383  two component, sigma54 specific, transcriptional regulator, Fis family  42.19 
 
 
483 aa  330  4e-89  Anaeromyxobacter sp. K  Bacteria  normal  0.246116  n/a   
 
 
-
 
NC_010676  Bphyt_6059  two component, sigma54 specific, transcriptional regulator, Fis family  43.28 
 
 
458 aa  330  4e-89  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0839917 
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  40.17 
 
 
472 aa  329  6e-89  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  39.62 
 
 
456 aa  328  9e-89  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_009708  YpsIP31758_0629  sigma-54 dependent transcriptional regulator  47.97 
 
 
342 aa  328  1.0000000000000001e-88  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  46.29 
 
 
455 aa  328  1.0000000000000001e-88  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  39.76 
 
 
486 aa  328  1.0000000000000001e-88  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  41.72 
 
 
463 aa  328  1.0000000000000001e-88  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
487 aa  328  1.0000000000000001e-88  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  42.4 
 
 
451 aa  328  2.0000000000000001e-88  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  39.7 
 
 
452 aa  328  2.0000000000000001e-88  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  44.15 
 
 
387 aa  327  3e-88  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  39.75 
 
 
461 aa  327  3e-88  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  47.14 
 
 
461 aa  327  3e-88  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_009483  Gura_0916  two component, sigma-54 specific, Fis family transcriptional regulator  40.33 
 
 
480 aa  327  4.0000000000000003e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  40.08 
 
 
462 aa  327  4.0000000000000003e-88  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  39.83 
 
 
480 aa  326  5e-88  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
461 aa  326  5e-88  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  42.47 
 
 
457 aa  326  6e-88  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_4250  two component, sigma54 specific, Fis family transcriptional regulator  41.78 
 
 
483 aa  325  7e-88  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.126719  n/a   
 
 
-
 
NC_009972  Haur_0838  two component, sigma54 specific, Fis family transcriptional regulator  45.55 
 
 
457 aa  326  7e-88  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3302  two component, sigma54 specific, transcriptional regulator, Fis family  42.09 
 
 
472 aa  325  8.000000000000001e-88  Haliangium ochraceum DSM 14365  Bacteria  normal  0.334689  normal  0.605218 
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  45.79 
 
 
460 aa  325  9e-88  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  42.24 
 
 
458 aa  325  1e-87  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
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