More than 300 homologs were found in PanDaTox collection
for query gene PC1_0111 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0110  methyl-accepting chemotaxis sensory transducer  71.43 
 
 
548 aa  768    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.975087  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  71.53 
 
 
548 aa  781    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  100 
 
 
556 aa  1116    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  88.67 
 
 
556 aa  991    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  56.84 
 
 
560 aa  597  1e-169  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3862  methyl-accepting chemotaxis sensory transducer  54.64 
 
 
555 aa  583  1.0000000000000001e-165  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  55.99 
 
 
605 aa  579  1e-164  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  55.8 
 
 
605 aa  578  1e-164  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_012917  PC1_0113  methyl-accepting chemotaxis sensory transducer  54.01 
 
 
559 aa  563  1.0000000000000001e-159  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  52.95 
 
 
556 aa  559  1e-158  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_013421  Pecwa_0107  methyl-accepting chemotaxis sensory transducer  53.48 
 
 
559 aa  556  1e-157  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3863  methyl-accepting chemotaxis sensory transducer  53.21 
 
 
560 aa  555  1e-157  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  53.74 
 
 
559 aa  552  1e-156  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3865  methyl-accepting chemotaxis sensory transducer  52.52 
 
 
551 aa  552  1e-156  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  52.15 
 
 
556 aa  552  1e-156  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  51.85 
 
 
543 aa  535  1e-151  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4048  methyl-accepting chemotaxis sensory transducer  54.6 
 
 
542 aa  535  1e-151  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3910  methyl-accepting chemotaxis sensory transducer  50.09 
 
 
555 aa  509  1e-143  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4084  methyl-accepting chemotaxis sensory transducer  50.27 
 
 
555 aa  505  9.999999999999999e-143  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4053  methyl-accepting chemotaxis sensory transducer  49.9 
 
 
545 aa  484  1e-135  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3866  methyl-accepting chemotaxis sensory transducer  48.85 
 
 
545 aa  484  1e-135  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2325  methyl-accepting chemotaxis sensory transducer  54.21 
 
 
575 aa  466  9.999999999999999e-131  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.952839 
 
 
-
 
NC_010002  Daci_4524  methyl-accepting chemotaxis sensory transducer  50.77 
 
 
599 aa  464  1e-129  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  42.83 
 
 
589 aa  405  1e-111  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  41.43 
 
 
554 aa  382  1e-105  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  65.26 
 
 
597 aa  385  1e-105  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6240  chemotaxis sensory transducer  46.84 
 
 
556 aa  375  1e-103  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  42.41 
 
 
584 aa  370  1e-101  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  39.89 
 
 
553 aa  367  1e-100  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  49.46 
 
 
525 aa  360  4e-98  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  42.77 
 
 
583 aa  359  8e-98  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  45.88 
 
 
520 aa  358  9.999999999999999e-98  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  41.23 
 
 
537 aa  349  6e-95  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  38.45 
 
 
586 aa  349  8e-95  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  45.97 
 
 
622 aa  347  2e-94  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  42.88 
 
 
511 aa  347  3e-94  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  51.8 
 
 
581 aa  345  2e-93  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_009075  BURPS668_A2764  methyl-accepting chemotaxis protein  41.24 
 
 
562 aa  343  5.999999999999999e-93  Burkholderia pseudomallei 668  Bacteria  normal  0.627836  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1029  methyl-accepting chemotaxis protein  41.24 
 
 
562 aa  343  5.999999999999999e-93  Burkholderia pseudomallei 1710b  Bacteria  normal  0.815966  n/a   
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  55.52 
 
 
573 aa  342  1e-92  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  45.33 
 
 
579 aa  340  2.9999999999999998e-92  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_006349  BMAA0152  methyl-accepting chemotaxis protein  41.62 
 
 
565 aa  340  5e-92  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1321  methyl-accepting chemotaxis protein  41.62 
 
 
565 aa  340  5e-92  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0176  methyl-accepting chemotaxis protein  41.62 
 
 
565 aa  340  5e-92  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2620  methyl-accepting chemotaxis protein  42.31 
 
 
562 aa  339  5.9999999999999996e-92  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  39.2 
 
 
569 aa  338  9.999999999999999e-92  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3767  methyl-accepting chemotaxis sensory transducer  41.18 
 
 
544 aa  338  1.9999999999999998e-91  Delftia acidovorans SPH-1  Bacteria  normal  0.155197  normal  0.170651 
 
 
-
 
NC_012880  Dd703_2474  methyl-accepting chemotaxis sensory transducer  38.79 
 
 
552 aa  334  2e-90  Dickeya dadantii Ech703  Bacteria  normal  0.356267  n/a   
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  41.19 
 
 
543 aa  332  8e-90  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  46.58 
 
 
584 aa  332  1e-89  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  39.11 
 
 
553 aa  331  2e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  40.67 
 
 
586 aa  330  3e-89  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_013421  Pecwa_2070  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.81 
 
 
519 aa  330  4e-89  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0449  methyl-accepting chemotaxis protein  41.41 
 
 
562 aa  330  5.0000000000000004e-89  Burkholderia thailandensis E264  Bacteria  normal  0.123732  n/a   
 
 
-
 
NC_012917  PC1_1797  methyl-accepting chemotaxis sensory transducer with Cache sensor  60.13 
 
 
519 aa  330  6e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  decreased coverage  0.00249048  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  43 
 
 
592 aa  329  8e-89  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
576 aa  329  9e-89  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  39.7 
 
 
578 aa  328  2.0000000000000001e-88  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  57.52 
 
 
541 aa  328  2.0000000000000001e-88  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  51.36 
 
 
559 aa  327  3e-88  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  41.15 
 
 
613 aa  326  7e-88  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  39.51 
 
 
580 aa  326  8.000000000000001e-88  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  40.53 
 
 
559 aa  325  2e-87  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  43.87 
 
 
548 aa  325  2e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  43.19 
 
 
547 aa  325  2e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  50.82 
 
 
579 aa  324  3e-87  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_010676  Bphyt_6645  methyl-accepting chemotaxis sensory transducer  41.27 
 
 
583 aa  323  4e-87  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.983597 
 
 
-
 
NC_010002  Daci_5852  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
618 aa  323  5e-87  Delftia acidovorans SPH-1  Bacteria  normal  0.217953  normal 
 
 
-
 
NC_008782  Ajs_2968  methyl-accepting chemotaxis sensory transducer  46.57 
 
 
572 aa  323  5e-87  Acidovorax sp. JS42  Bacteria  normal  normal  0.536058 
 
 
-
 
NC_011992  Dtpsy_2395  methyl-accepting chemotaxis sensory transducer  46.57 
 
 
572 aa  322  8e-87  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  57.47 
 
 
578 aa  322  9.999999999999999e-87  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_008782  Ajs_3664  methyl-accepting chemotaxis sensory transducer  46.75 
 
 
598 aa  321  3e-86  Acidovorax sp. JS42  Bacteria  normal  0.197645  normal 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  50.56 
 
 
585 aa  320  3.9999999999999996e-86  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_008752  Aave_2108  methyl-accepting chemotaxis sensory transducer  40.59 
 
 
517 aa  320  3.9999999999999996e-86  Acidovorax citrulli AAC00-1  Bacteria  normal  0.832466  normal 
 
 
-
 
NC_010002  Daci_0742  methyl-accepting chemotaxis sensory transducer  41.2 
 
 
581 aa  320  5e-86  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  52.27 
 
 
519 aa  320  6e-86  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1719  methyl-accepting chemotaxis sensory transducer with Cache sensor  57.94 
 
 
517 aa  319  7e-86  Dickeya dadantii Ech703  Bacteria  unclonable  0.00000712436  n/a   
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  51.66 
 
 
573 aa  319  7e-86  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_007951  Bxe_A1341  methyl-accepting chemotaxis sensory transducer  51.36 
 
 
558 aa  319  7.999999999999999e-86  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  40.85 
 
 
539 aa  319  7.999999999999999e-86  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_010625  Bphy_5592  methyl-accepting chemotaxis sensory transducer  40.4 
 
 
567 aa  318  1e-85  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3926  methyl-accepting chemotaxis sensory transducer with Cache sensor  41.21 
 
 
665 aa  319  1e-85  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4354  methyl-accepting chemotaxis sensory transducer  38.52 
 
 
555 aa  319  1e-85  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  40.95 
 
 
552 aa  318  2e-85  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  39.93 
 
 
559 aa  317  3e-85  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_012857  Rpic12D_4163  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
634 aa  317  4e-85  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4051  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
634 aa  317  4e-85  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2974  methyl-accepting chemotaxis sensory transducer with Cache sensor  46.75 
 
 
579 aa  317  4e-85  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.00885268  n/a   
 
 
-
 
NC_012857  Rpic12D_4347  methyl-accepting chemotaxis sensory transducer with Cache sensor  57.65 
 
 
513 aa  315  9.999999999999999e-85  Ralstonia pickettii 12D  Bacteria  normal  normal  0.473159 
 
 
-
 
NC_010678  Rpic_4237  methyl-accepting chemotaxis sensory transducer  57.65 
 
 
513 aa  315  9.999999999999999e-85  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  49.35 
 
 
579 aa  315  9.999999999999999e-85  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_012917  PC1_4072  methyl-accepting chemotaxis sensory transducer  39.53 
 
 
540 aa  315  9.999999999999999e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2488  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.38 
 
 
512 aa  315  9.999999999999999e-85  Dickeya dadantii Ech703  Bacteria  normal  0.0783891  n/a   
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  40.04 
 
 
594 aa  315  1.9999999999999998e-84  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  53.33 
 
 
520 aa  314  2.9999999999999996e-84  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  53.39 
 
 
591 aa  314  2.9999999999999996e-84  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  51.1 
 
 
589 aa  314  2.9999999999999996e-84  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  40.56 
 
 
595 aa  313  3.9999999999999997e-84  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  54.55 
 
 
519 aa  313  4.999999999999999e-84  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_007974  Rmet_5306  methyl-accepting chemotaxis sensory transducer  41.1 
 
 
565 aa  313  5.999999999999999e-84  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00488588  normal  0.0415564 
 
 
-
 
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