More than 300 homologs were found in PanDaTox collection
for query gene PC1_1797 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_2070  methyl-accepting chemotaxis sensory transducer with Cache sensor  96.92 
 
 
519 aa  965    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1719  methyl-accepting chemotaxis sensory transducer with Cache sensor  77.86 
 
 
517 aa  788    Dickeya dadantii Ech703  Bacteria  unclonable  0.00000712436  n/a   
 
 
-
 
NC_012917  PC1_1797  methyl-accepting chemotaxis sensory transducer with Cache sensor  100 
 
 
519 aa  1050    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  decreased coverage  0.00249048  n/a   
 
 
-
 
NC_012880  Dd703_2488  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.88 
 
 
512 aa  419  1e-116  Dickeya dadantii Ech703  Bacteria  normal  0.0783891  n/a   
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.83 
 
 
566 aa  422  1e-116  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  47.53 
 
 
541 aa  410  1e-113  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_012856  Rpic12D_1091  methyl-accepting chemotaxis sensory transducer with Cache sensor  48.03 
 
 
618 aa  405  1.0000000000000001e-112  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0995  methyl-accepting chemotaxis sensory transducer  47.47 
 
 
621 aa  405  1e-111  Ralstonia pickettii 12J  Bacteria  normal  normal  0.203772 
 
 
-
 
NC_010625  Bphy_5545  methyl-accepting chemotaxis sensory transducer  46.97 
 
 
512 aa  400  9.999999999999999e-111  Burkholderia phymatum STM815  Bacteria  normal  normal  0.857112 
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  44.95 
 
 
519 aa  401  9.999999999999999e-111  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  47.02 
 
 
520 aa  395  1e-109  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1155  methyl-accepting chemotaxis transducer transmembrane protein  47.61 
 
 
629 aa  392  1e-108  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.852924 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  50 
 
 
585 aa  394  1e-108  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  47.78 
 
 
585 aa  390  1e-107  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  47.87 
 
 
515 aa  391  1e-107  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  47.67 
 
 
515 aa  389  1e-107  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  43.73 
 
 
519 aa  388  1e-106  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_011992  Dtpsy_2974  methyl-accepting chemotaxis sensory transducer with Cache sensor  46.48 
 
 
579 aa  386  1e-106  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.00885268  n/a   
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  45.4 
 
 
519 aa  386  1e-106  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS02605  putative methyl-accepting chemotaxis transducer transmembrane protein  48.24 
 
 
513 aa  383  1e-105  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0414906  normal  0.0642458 
 
 
-
 
NC_009074  BURPS668_0502  methyl-accepting chemotaxis protein  47.75 
 
 
546 aa  382  1e-105  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3664  methyl-accepting chemotaxis sensory transducer  46.29 
 
 
598 aa  382  1e-105  Acidovorax sp. JS42  Bacteria  normal  0.197645  normal 
 
 
-
 
NC_009080  BMA10247_2862  methyl-accepting chemotaxis protein  47.66 
 
 
546 aa  382  1e-104  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0557  methyl-accepting chemotaxis sensory transducer  46.98 
 
 
627 aa  380  1e-104  Burkholderia phytofirmans PsJN  Bacteria  normal  0.191348  normal  0.480006 
 
 
-
 
NC_007651  BTH_I0438  methyl-accepting chemotaxis protein  48.28 
 
 
512 aa  381  1e-104  Burkholderia thailandensis E264  Bacteria  normal  0.212381  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0157  methyl-accepting chemotaxis protein  47.66 
 
 
546 aa  382  1e-104  Burkholderia mallei SAVP1  Bacteria  normal  0.293853  n/a   
 
 
-
 
NC_008836  BMA10229_A1435  methyl-accepting chemotaxis protein  47.66 
 
 
546 aa  382  1e-104  Burkholderia mallei NCTC 10229  Bacteria  normal  0.631191  n/a   
 
 
-
 
NC_009076  BURPS1106A_0520  methyl-accepting chemotaxis protein  47.66 
 
 
546 aa  382  1e-104  Burkholderia pseudomallei 1106a  Bacteria  normal  0.640738  n/a   
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  47 
 
 
584 aa  381  1e-104  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_003295  RSc2799  putative methyl-accepting chemotaxis transmembrane protein  47.38 
 
 
515 aa  378  1e-103  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00825356  normal  0.849966 
 
 
-
 
NC_012857  Rpic12D_4347  methyl-accepting chemotaxis sensory transducer with Cache sensor  49.49 
 
 
513 aa  377  1e-103  Ralstonia pickettii 12D  Bacteria  normal  normal  0.473159 
 
 
-
 
NC_006348  BMA3184  methyl-accepting chemotaxis protein  49.59 
 
 
511 aa  375  1e-103  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4237  methyl-accepting chemotaxis sensory transducer  49.49 
 
 
513 aa  377  1e-103  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_0685  methyl-accepting chemotaxis protein  48.89 
 
 
526 aa  378  1e-103  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  46.14 
 
 
584 aa  376  1e-103  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6164  methyl-accepting chemotaxis sensory transducer  47.2 
 
 
544 aa  373  1e-102  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4159  methyl-accepting chemotaxis sensory transducer  46.2 
 
 
611 aa  372  1e-102  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2751  methyl-accepting chemotaxis sensory transducer  47.58 
 
 
521 aa  375  1e-102  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2845  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
545 aa  369  1e-101  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.788597  normal 
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  47.54 
 
 
598 aa  369  1e-101  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  63.55 
 
 
586 aa  369  1e-101  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_008390  Bamb_2891  methyl-accepting chemotaxis sensory transducer  46.81 
 
 
521 aa  370  1e-101  Burkholderia ambifaria AMMD  Bacteria  normal  0.657214  n/a   
 
 
-
 
NC_007348  Reut_B5230  methyl-accepting chemotaxis sensory transducer  45.71 
 
 
518 aa  367  1e-100  Ralstonia eutropha JMP134  Bacteria  normal  0.530292  n/a   
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  46.64 
 
 
587 aa  367  1e-100  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_007974  Rmet_5935  methyl-accepting chemotaxis sensory transducer  46.71 
 
 
520 aa  365  1e-100  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2221  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
545 aa  367  1e-100  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0469  methyl-accepting chemotaxis sensory transducer  48.16 
 
 
549 aa  368  1e-100  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_2834  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
545 aa  367  1e-100  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3823  methyl-accepting chemotaxis sensory transducer  44.51 
 
 
513 aa  365  1e-99  Burkholderia phymatum STM815  Bacteria  normal  normal  0.793143 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  61.83 
 
 
579 aa  365  1e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008062  Bcen_6446  methyl-accepting chemotaxis sensory transducer  46.58 
 
 
512 aa  363  5.0000000000000005e-99  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6681  methyl-accepting chemotaxis sensory transducer  46.58 
 
 
512 aa  363  5.0000000000000005e-99  Burkholderia cenocepacia HI2424  Bacteria  normal  0.292072  normal 
 
 
-
 
NC_010512  Bcenmc03_6278  methyl-accepting chemotaxis sensory transducer  46.58 
 
 
512 aa  362  6e-99  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.236466  normal  0.246568 
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  60.17 
 
 
579 aa  362  7.0000000000000005e-99  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  60.06 
 
 
583 aa  361  2e-98  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_012880  Dd703_1028  methyl-accepting chemotaxis sensory transducer with Cache sensor  44.19 
 
 
532 aa  360  5e-98  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2784  methyl-accepting chemotaxis sensory transducer  45 
 
 
542 aa  359  6e-98  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  62.74 
 
 
597 aa  359  7e-98  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  63.29 
 
 
559 aa  358  9.999999999999999e-98  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_007952  Bxe_B2628  methyl-accepting chemotaxis sensory transducer  46.32 
 
 
515 aa  356  6.999999999999999e-97  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0020256  hitchhiker  0.000579335 
 
 
-
 
NC_010557  BamMC406_6056  methyl-accepting chemotaxis sensory transducer  46.38 
 
 
512 aa  355  7.999999999999999e-97  Burkholderia ambifaria MC40-6  Bacteria  normal  0.301677  normal 
 
 
-
 
NC_008392  Bamb_6352  methyl-accepting chemotaxis sensory transducer  46.18 
 
 
512 aa  354  2e-96  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  62.66 
 
 
594 aa  353  4e-96  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6769  methyl-accepting chemotaxis sensory transducer  44.89 
 
 
519 aa  353  4e-96  Burkholderia phytofirmans PsJN  Bacteria  normal  0.176172  normal  0.340215 
 
 
-
 
NC_010676  Bphyt_6518  methyl-accepting chemotaxis sensory transducer  44.58 
 
 
514 aa  352  8e-96  Burkholderia phytofirmans PsJN  Bacteria  normal  0.73924  normal 
 
 
-
 
NC_007963  Csal_2778  methyl-accepting chemotaxis sensory transducer  43.6 
 
 
544 aa  352  8e-96  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.643433  n/a   
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  59.51 
 
 
579 aa  351  1e-95  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  61.56 
 
 
532 aa  352  1e-95  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  59.33 
 
 
556 aa  351  2e-95  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  60.57 
 
 
589 aa  351  2e-95  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  56.89 
 
 
543 aa  350  3e-95  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1710  methyl-accepting chemotaxis protein  42.91 
 
 
517 aa  350  5e-95  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4727  methyl-accepting chemotaxis sensory transducer  44.12 
 
 
517 aa  350  5e-95  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.308358 
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  57.01 
 
 
573 aa  350  5e-95  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_009078  BURPS1106A_A1623  methyl-accepting chemotaxis protein  42.91 
 
 
517 aa  349  7e-95  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1341  methyl-accepting chemotaxis sensory transducer  56.72 
 
 
558 aa  349  7e-95  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_3780  methyl-accepting chemotaxis sensory transducer  44.12 
 
 
517 aa  348  1e-94  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0330596 
 
 
-
 
NC_009078  BURPS1106A_A2638  methyl-accepting chemotaxis protein  41.31 
 
 
521 aa  348  2e-94  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1043  putative methyl-accepting chemotaxis transducer transmembrane protein  41.31 
 
 
521 aa  348  2e-94  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  58.06 
 
 
578 aa  347  2e-94  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  57.67 
 
 
556 aa  348  2e-94  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5380  methyl-accepting chemotaxis sensory transducer  42.42 
 
 
524 aa  348  2e-94  Burkholderia phymatum STM815  Bacteria  normal  0.653994  normal  0.987419 
 
 
-
 
NC_009075  BURPS668_A2780  methyl-accepting chemotaxis protein  41.31 
 
 
521 aa  348  2e-94  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2237  methyl-accepting chemotaxis sensory transducer  43.03 
 
 
513 aa  347  3e-94  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4204  methyl-accepting chemotaxis sensory transducer  44.12 
 
 
517 aa  347  3e-94  Burkholderia ambifaria AMMD  Bacteria  normal  0.305878  normal 
 
 
-
 
NC_007511  Bcep18194_B0881  methyl-accepting chemotaxis sensory transducer  44.81 
 
 
517 aa  346  6e-94  Burkholderia sp. 383  Bacteria  normal  normal  0.284562 
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  57.32 
 
 
548 aa  346  6e-94  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  59.27 
 
 
605 aa  345  1e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_010002  Daci_4524  methyl-accepting chemotaxis sensory transducer  58.65 
 
 
599 aa  345  1e-93  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  59.27 
 
 
605 aa  345  1e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  59.29 
 
 
569 aa  344  2.9999999999999997e-93  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5460  methyl-accepting chemotaxis sensory transducer  43.92 
 
 
517 aa  343  5e-93  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.601436  normal  0.166688 
 
 
-
 
NC_008061  Bcen_3544  methyl-accepting chemotaxis sensory transducer  43.92 
 
 
541 aa  343  5e-93  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.256262  n/a   
 
 
-
 
NC_008543  Bcen2424_4823  methyl-accepting chemotaxis sensory transducer  43.92 
 
 
541 aa  343  5e-93  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.224381 
 
 
-
 
NC_010676  Bphyt_4117  methyl-accepting chemotaxis sensory transducer  41.54 
 
 
545 aa  343  5e-93  Burkholderia phytofirmans PsJN  Bacteria  normal  0.36552  normal 
 
 
-
 
NC_011992  Dtpsy_0353  methyl-accepting chemotaxis sensory transducer with Cache sensor  44.93 
 
 
564 aa  342  7e-93  Acidovorax ebreus TPSY  Bacteria  normal  0.244374  n/a   
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  57.31 
 
 
584 aa  342  9e-93  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_010002  Daci_4414  methyl-accepting chemotaxis sensory transducer  46.96 
 
 
518 aa  341  2e-92  Delftia acidovorans SPH-1  Bacteria  normal  0.684904  normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  54.29 
 
 
559 aa  340  2.9999999999999998e-92  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  57.65 
 
 
576 aa  340  4e-92  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
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