More than 300 homologs were found in PanDaTox collection
for query gene Mchl_2254 on replicon NC_011757
Organism: Methylobacterium chloromethanicum CM4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011757  Mchl_2254  transcriptional regulator, LuxR family  100 
 
 		 235 aa  456  1e-127  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_1977  regulatory protein LuxR  94.67 
 
 		 235 aa  394  1e-109  Methylobacterium extorquens PA1  Bacteria  normal  0.215897  normal  1 
 
 
-
 
NC_010725  Mpop_1932  transcriptional regulator, LuxR family  79.25 
 
 		 241 aa  349  2e-95  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0592371 
 
 
-
 
NC_010505  Mrad2831_0756  LuxR family transcriptional regulator  57.49 
 
 		 228 aa  197  7.999999999999999e-50  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.826443 
 
 
-
 
NC_010511  M446_5044  LuxR family transcriptional regulator  55.87 
 
 		 230 aa  192  4e-48  Methylobacterium sp. 4-46  Bacteria  normal  0.263575  hitchhiker  0.00837426 
 
 
-
 
NC_011894  Mnod_5351  transcriptional regulator, LuxR family  57.94 
 
 		 229 aa  191  8e-48  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.649636  n/a   
 
 
-
 
NC_010505  Mrad2831_1294  LuxR family transcriptional regulator  52 
 
 		 252 aa  171  1e-41  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007973  Rmet_3576  two component LuxR family transcriptional regulator  34.27 
 
 		 228 aa  90.9  1e-17  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  33.97 
 
 		 215 aa  85.5  7e-16  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  32.04 
 
 		 213 aa  83.6  0.000000000000003  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.53826 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  32.35 
 
 		 214 aa  81.3  0.00000000000001  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  30.81 
 
 		 214 aa  81.3  0.00000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  33.65 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  33.65 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  33.65 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  32.35 
 
 		 214 aa  80.5  0.00000000000002  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  33.65 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  33.65 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  33.65 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  34.33 
 
 		 215 aa  80.5  0.00000000000002  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  34.01 
 
 		 231 aa  80.1  0.00000000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_008781  Pnap_3523  two component LuxR family transcriptional regulator  31.25 
 
 		 224 aa  77  0.0000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  31.13 
 
 		 215 aa  77  0.0000000000003  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  37.82 
 
 		 220 aa  76.6  0.0000000000003  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.929677 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  36.3 
 
 		 213 aa  76.3  0.0000000000004  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_4476  two component transcriptional regulator, LuxR family  29.8 
 
 		 215 aa  76.3  0.0000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008752  Aave_1121  two component LuxR family transcriptional regulator  37.24 
 
 		 222 aa  75.9  0.0000000000005  Acidovorax citrulli AAC00-1  Bacteria  normal  0.864132  normal  0.872256 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  27.44 
 
 		 215 aa  75.5  0.0000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  27.75 
 
 		 214 aa  75.1  0.0000000000009  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  31 
 
 		 213 aa  75.1  0.000000000001  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007952  Bxe_B0788  two component LuxR family transcriptional regulator  31.82 
 
 		 218 aa  74.7  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.3296  normal  1 
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  32.66 
 
 		 214 aa  73.6  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  1  hitchhiker  0.00509748 
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  32.06 
 
 		 214 aa  74.3  0.000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.10411 
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  31.58 
 
 		 214 aa  73.2  0.000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.0560765 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  31.58 
 
 		 214 aa  73.2  0.000000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  31.58 
 
 		 214 aa  73.2  0.000000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  1  hitchhiker  0.00685344 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  32.16 
 
 		 214 aa  72.8  0.000000000004  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  32.16 
 
 		 214 aa  72.8  0.000000000005  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0203352 
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  32.38 
 
 		 217 aa  71.6  0.00000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  35.53 
 
 		 228 aa  71.2  0.00000000001  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal  1 
 
 
-
 
NC_009439  Pmen_0083  two component LuxR family transcriptional regulator  32.54 
 
 		 210 aa  69.7  0.00000000003  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_1943  two component LuxR family transcriptional regulator  27.96 
 
 		 214 aa  69.7  0.00000000004  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_2781  two component LuxR family transcriptional regulator  32.2 
 
 		 204 aa  68.9  0.00000000007  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  30.58 
 
 		 217 aa  68.6  0.00000000009  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_009832  Spro_1286  two component LuxR family transcriptional regulator  31.17 
 
 		 213 aa  68.2  0.0000000001  Serratia proteamaculans 568  Bacteria  normal  1  normal  0.172682 
 
 
-
 
NC_013235  Namu_2014  two component transcriptional regulator, LuxR family  32.19 
 
 		 212 aa  67  0.0000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.172206  hitchhiker  0.00394331 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  37.88 
 
 		 221 aa  67.8  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013501  Rmar_2437  two component transcriptional regulator, LuxR family  32.88 
 
 		 218 aa  67  0.0000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  27.23 
 
 		 219 aa  67  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  28.77 
 
 		 214 aa  67.4  0.0000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  30.81 
 
 		 228 aa  67.8  0.0000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008726  Mvan_5474  two component LuxR family transcriptional regulator  30.77 
 
 		 212 aa  67.4  0.0000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.344108  normal  0.73382 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  30.58 
 
 		 217 aa  67  0.0000000002  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  32.53 
 
 		 224 aa  66.6  0.0000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  32.86 
 
 		 233 aa  66.6  0.0000000003  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_009439  Pmen_4040  two component LuxR family transcriptional regulator  33.59 
 
 		 216 aa  67  0.0000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.56786  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  39.17 
 
 		 212 aa  66.6  0.0000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  31.29 
 
 		 218 aa  65.9  0.0000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  35.71 
 
 		 215 aa  65.9  0.0000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  38.52 
 
 		 228 aa  65.5  0.0000000006  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  34.56 
 
 		 222 aa  65.5  0.0000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  36.29 
 
 		 210 aa  65.5  0.0000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  hitchhiker  0.000518478 
 
 
-
 
NC_010498  EcSMS35_0580  transcriptional regulator FimZ  26.67 
 
 		 210 aa  65.5  0.0000000007  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
CP001637  EcDH1_3078  two component transcriptional regulator, LuxR family  26.67 
 
 		 210 aa  65.5  0.0000000008  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_0636  transcriptional regulator FimZ  26.67 
 
 		 210 aa  65.5  0.0000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.931873  normal  0.250092 
 
 
-
 
NC_007948  Bpro_0709  two component LuxR family transcriptional regulator  30.43 
 
 		 224 aa  65.1  0.0000000008  Polaromonas sp. JS666  Bacteria  normal  0.421893  normal  1 
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.44 
 
 		 213 aa  65.1  0.0000000008  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_0577  transcriptional regulator FimZ  26.67 
 
 		 210 aa  65.5  0.0000000008  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_0370  two component LuxR family transcriptional regulator  35.77 
 
 		 214 aa  65.5  0.0000000008  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.273913 
 
 
-
 
CP001509  ECD_00485  predicted DNA-binding transcriptional regulator  26.67 
 
 		 210 aa  65.1  0.0000000009  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_38420  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  30.39 
 
 		 226 aa  65.1  0.0000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012892  B21_00490  hypothetical protein  26.67 
 
 		 210 aa  65.1  0.0000000009  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  35.56 
 
 		 220 aa  65.1  0.0000000009  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  31.25 
 
 		 206 aa  65.1  0.0000000009  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_009800  EcHS_A0610  transcriptional regulator FimZ  26.67 
 
 		 210 aa  65.1  0.0000000009  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_3087  transcriptional regulator FimZ  26.67 
 
 		 210 aa  65.1  0.0000000009  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010159  YpAngola_A3945  putative DNA-binding response regulator EsrB  27.4 
 
 		 210 aa  65.1  0.000000001  Yersinia pestis Angola  Bacteria  normal  0.0480381  normal  1 
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  25.24 
 
 		 207 aa  64.7  0.000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_009708  YpsIP31758_3833  putative DNA-binding response regulator EsrB  26.92 
 
 		 210 aa  64.3  0.000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  35.65 
 
 		 220 aa  64.3  0.000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  33.68 
 
 		 218 aa  65.1  0.000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  27.1 
 
 		 218 aa  64.7  0.000000001  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_010571  Oter_3357  two component LuxR family transcriptional regulator  36.57 
 
 		 238 aa  64.7  0.000000001  Opitutus terrae PB90-1  Bacteria  normal  0.1255  normal  1 
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  28.02 
 
 		 218 aa  64.7  0.000000001  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  28.84 
 
 		 236 aa  64.7  0.000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_010465  YPK_3919  two component LuxR family transcriptional regulator  26.92 
 
 		 210 aa  64.3  0.000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_008752  Aave_4229  two component LuxR family transcriptional regulator  34.5 
 
 		 219 aa  64.7  0.000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.720334  normal  0.28913 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  28.44 
 
 		 218 aa  63.9  0.000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  29.81 
 
 		 223 aa  64.3  0.000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.658241 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  27.69 
 
 		 215 aa  64.3  0.000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  30.26 
 
 		 213 aa  63.9  0.000000002  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_2079  two component transcriptional regulator, LuxR family  25.89 
 
 		 212 aa  63.9  0.000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  27.14 
 
 		 222 aa  64.3  0.000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_0211  two component LuxR family transcriptional regulator  46.67 
 
 		 228 aa  63.9  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.664514  normal  1 
 
 
-
 
NC_013037  Dfer_5727  two component transcriptional regulator, LuxR family  29.01 
 
 		 212 aa  64.3  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.412106 
 
 
-
 
NC_010658  SbBS512_E0462  transcriptional regulator FimZ  27.81 
 
 		 199 aa  63.9  0.000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.739138  n/a   
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  33.17 
 
 		 216 aa  63.9  0.000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  36.11 
 
 		 214 aa  64.3  0.000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal  1 
 
 
-
 
NC_012560  Avin_41040  Two-component response regulator, LuxR family  35.97 
 
 		 208 aa  63.9  0.000000002  Azotobacter vinelandii DJ  Bacteria  normal  0.136918  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  28.44 
 
 		 218 aa  63.9  0.000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
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