More than 300 homologs were found in PanDaTox collection
for query gene Amir_3000 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_3000  short chain dehydrogenase  100 
 
 
272 aa  518  1e-146  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0641388  n/a   
 
 
-
 
NC_009921  Franean1_4340  short chain dehydrogenase  62.36 
 
 
280 aa  259  2e-68  Frankia sp. EAN1pec  Bacteria  normal  0.0293254  normal 
 
 
-
 
NC_003295  RSc0215  short chain dehydrogenase  47.99 
 
 
275 aa  222  6e-57  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_2508  short-chain dehydrogenase/reductase SDR  38.58 
 
 
277 aa  201  9.999999999999999e-51  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_18450  short chain dehydrogenase  38.66 
 
 
279 aa  187  1e-46  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.0882393  normal 
 
 
-
 
NC_010655  Amuc_1001  short chain dehydrogenase  37.69 
 
 
301 aa  166  2.9999999999999998e-40  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.903414 
 
 
-
 
NC_009921  Franean1_4594  short-chain dehydrogenase/reductase SDR  36.23 
 
 
306 aa  134  1.9999999999999998e-30  Frankia sp. EAN1pec  Bacteria  normal  normal  0.90193 
 
 
-
 
NC_009077  Mjls_5611  short-chain dehydrogenase/reductase SDR  35.45 
 
 
279 aa  127  2.0000000000000002e-28  Mycobacterium sp. JLS  Bacteria  normal  0.288274  normal  0.29741 
 
 
-
 
NC_009921  Franean1_4740  short-chain dehydrogenase/reductase SDR  38.26 
 
 
285 aa  120  1.9999999999999998e-26  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_5319  short-chain dehydrogenase/reductase SDR  35 
 
 
266 aa  119  3.9999999999999996e-26  Mycobacterium sp. KMS  Bacteria  normal  normal  0.64422 
 
 
-
 
NC_008726  Mvan_5812  short-chain dehydrogenase/reductase SDR  34.22 
 
 
280 aa  117  1.9999999999999998e-25  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.439013  normal 
 
 
-
 
NC_008146  Mmcs_5231  short chain dehydrogenase  34.55 
 
 
252 aa  114  2.0000000000000002e-24  Mycobacterium sp. MCS  Bacteria  normal  0.0476444  n/a   
 
 
-
 
NC_009338  Mflv_1024  short-chain dehydrogenase/reductase SDR  34.22 
 
 
277 aa  105  1e-21  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0344  short-chain dehydrogenase/reductase SDR  38.01 
 
 
278 aa  103  2e-21  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0130127 
 
 
-
 
NC_009511  Swit_1669  short-chain dehydrogenase/reductase SDR  32.27 
 
 
242 aa  84.7  0.000000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4012  short-chain dehydrogenase/reductase SDR  31.62 
 
 
276 aa  84  0.000000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4884  short-chain dehydrogenase/reductase SDR  30.66 
 
 
274 aa  83.6  0.000000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_20330  Short-chain dehydrogenase/reductase SDR  32.61 
 
 
281 aa  82.8  0.000000000000005  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2225  Short-chain dehydrogenase/reductase SDR  31.84 
 
 
267 aa  80.9  0.00000000000002  Burkholderia sp. 383  Bacteria  normal  normal  0.801106 
 
 
-
 
NC_008786  Veis_3594  short-chain dehydrogenase/reductase SDR  28.57 
 
 
261 aa  79.3  0.00000000000005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.806821  normal  0.214566 
 
 
-
 
NC_010524  Lcho_1200  short-chain dehydrogenase/reductase SDR  32.1 
 
 
287 aa  79.3  0.00000000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_014212  Mesil_0154  short-chain dehydrogenase/reductase SDR  30.88 
 
 
255 aa  79  0.00000000000007  Meiothermus silvanus DSM 9946  Bacteria  normal  0.649375  normal  0.270956 
 
 
-
 
NC_007951  Bxe_A3615  putative dehydrogenase  30.25 
 
 
291 aa  79  0.00000000000008  Burkholderia xenovorans LB400  Bacteria  normal  0.427411  normal 
 
 
-
 
NC_007951  Bxe_A3604  putative dehydrogenase  29.54 
 
 
281 aa  78.6  0.0000000000001  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000000055827  normal 
 
 
-
 
NC_008786  Veis_2074  short-chain dehydrogenase/reductase SDR  29.59 
 
 
257 aa  77.8  0.0000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  decreased coverage  0.00108701 
 
 
-
 
NC_009436  Ent638_2028  acetoin reductase  28.37 
 
 
256 aa  77.8  0.0000000000002  Enterobacter sp. 638  Bacteria  normal  normal  0.24531 
 
 
-
 
NC_008010  Dgeo_2865  short-chain dehydrogenase/reductase SDR  30.86 
 
 
255 aa  77  0.0000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2377  short-chain dehydrogenase/reductase SDR  29.81 
 
 
249 aa  77.4  0.0000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.496864  normal  0.812615 
 
 
-
 
NC_009656  PSPA7_2450  3-alpha-hydroxysteroid dehydrogenase  34.01 
 
 
257 aa  76.6  0.0000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0588797  n/a   
 
 
-
 
NC_008044  TM1040_1004  short-chain dehydrogenase/reductase SDR  29.55 
 
 
234 aa  76.3  0.0000000000005  Ruegeria sp. TM1040  Bacteria  normal  0.159825  normal 
 
 
-
 
NC_013946  Mrub_2062  short-chain dehydrogenase/reductase SDR  29.67 
 
 
256 aa  75.5  0.0000000000008  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.624972 
 
 
-
 
NC_009427  Saro_3542  short-chain dehydrogenase/reductase SDR  29.17 
 
 
258 aa  75.5  0.0000000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0264  short-chain dehydrogenase/reductase SDR  29.31 
 
 
257 aa  75.1  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2143  short-chain dehydrogenase/reductase SDR  28.9 
 
 
251 aa  75.5  0.000000000001  Beutenbergia cavernae DSM 12333  Bacteria  decreased coverage  0.00162277  normal 
 
 
-
 
NC_011898  Ccel_1173  short-chain dehydrogenase/reductase SDR  26.67 
 
 
256 aa  75.1  0.000000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.0283651  n/a   
 
 
-
 
NC_012669  Bcav_3510  short-chain dehydrogenase/reductase SDR  29.1 
 
 
251 aa  73.9  0.000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.439576 
 
 
-
 
NC_008527  LACR_0974  acetoin reductase  28.1 
 
 
253 aa  74.7  0.000000000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1841  putative 3-ketoacyl-CoA reductase  31.64 
 
 
250 aa  73.6  0.000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2062  short-chain dehydrogenase/reductase SDR  32.12 
 
 
278 aa  73.6  0.000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2239  short-chain dehydrogenase/reductase SDR  28.06 
 
 
250 aa  73.6  0.000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_7927  short-chain dehydrogenase/reductase SDR  29.82 
 
 
268 aa  73.9  0.000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.173148  n/a   
 
 
-
 
NC_011772  BCG9842_B1783  glucose 1-dehydrogenase  24.72 
 
 
247 aa  73.6  0.000000000004  Bacillus cereus G9842  Bacteria  normal  0.88349  normal 
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  29.18 
 
 
246 aa  72.8  0.000000000005  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_011725  BCB4264_A3466  glucose 1-dehydrogenase  25.19 
 
 
247 aa  73.2  0.000000000005  Bacillus cereus B4264  Bacteria  normal  0.0764776  n/a   
 
 
-
 
NC_007963  Csal_0641  short chain dehydrogenase  30.26 
 
 
249 aa  72.8  0.000000000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2008  short-chain dehydrogenase/reductase SDR  30.74 
 
 
261 aa  72.8  0.000000000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.959898  normal  0.356317 
 
 
-
 
NC_009077  Mjls_2043  short chain dehydrogenase  30.19 
 
 
257 aa  72.4  0.000000000007  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0093  glucose/ribitol dehydrogenase  28.11 
 
 
259 aa  72.4  0.000000000007  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7132  Short-chain dehydrogenase/reductase SDR  34.81 
 
 
257 aa  72.4  0.000000000007  Burkholderia sp. 383  Bacteria  normal  0.928828  normal 
 
 
-
 
NC_008146  Mmcs_2060  short chain dehydrogenase  30.19 
 
 
257 aa  72.4  0.000000000007  Mycobacterium sp. MCS  Bacteria  normal  0.256692  n/a   
 
 
-
 
NC_008705  Mkms_2106  short chain dehydrogenase  30.19 
 
 
257 aa  72.4  0.000000000007  Mycobacterium sp. KMS  Bacteria  normal  normal  0.077628 
 
 
-
 
NC_014158  Tpau_1688  short-chain dehydrogenase/reductase SDR  44.76 
 
 
243 aa  72.4  0.000000000008  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.205541  n/a   
 
 
-
 
NC_007498  Pcar_1081  oxidoreductase, putative short-chain alcohol dehydrogenase  26.97 
 
 
253 aa  72.4  0.000000000008  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2397  oxidoreductase, short chain dehydrogenase/reductase family  30.96 
 
 
254 aa  71.6  0.00000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0465114  n/a   
 
 
-
 
NC_006687  CNE00130  conserved hypothetical protein  26.92 
 
 
302 aa  71.6  0.00000000001  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  n/a   
 
 
-
 
NC_007794  Saro_2963  short-chain dehydrogenase/reductase SDR  29.5 
 
 
250 aa  71.2  0.00000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.991261  n/a   
 
 
-
 
NC_008146  Mmcs_2791  short chain dehydrogenase  31.19 
 
 
256 aa  71.6  0.00000000001  Mycobacterium sp. MCS  Bacteria  normal  0.298424  n/a   
 
 
-
 
NC_009077  Mjls_2818  short chain dehydrogenase  31.19 
 
 
256 aa  71.6  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  0.101264  normal 
 
 
-
 
NC_008705  Mkms_2835  short chain dehydrogenase  31.19 
 
 
256 aa  71.6  0.00000000001  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2949  oxidoreductase, short-chain dehydrogenase/reductase family  30.99 
 
 
255 aa  71.2  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.084933  n/a   
 
 
-
 
NC_012791  Vapar_0325  short-chain dehydrogenase/reductase SDR  30.74 
 
 
304 aa  70.9  0.00000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2724  short-chain dehydrogenase/reductase SDR  30.22 
 
 
275 aa  70.9  0.00000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3729  short-chain dehydrogenase/reductase SDR  30.8 
 
 
249 aa  71.2  0.00000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011757  Mchl_1137  short-chain dehydrogenase/reductase SDR  30.68 
 
 
255 aa  70.9  0.00000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.420878 
 
 
-
 
NC_008391  Bamb_3260  short-chain dehydrogenase/reductase SDR  30.24 
 
 
255 aa  71.2  0.00000000002  Burkholderia ambifaria AMMD  Bacteria  decreased coverage  0.00276657  normal  0.102342 
 
 
-
 
NC_010322  PputGB1_2748  short-chain dehydrogenase/reductase SDR  30.65 
 
 
275 aa  70.9  0.00000000002  Pseudomonas putida GB-1  Bacteria  normal  0.710224  normal  0.547763 
 
 
-
 
NC_013172  Bfae_29820  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  28.57 
 
 
261 aa  70.9  0.00000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4338  short-chain dehydrogenase/reductase SDR  32.38 
 
 
293 aa  70.9  0.00000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.305242  normal 
 
 
-
 
NC_013744  Htur_3801  short-chain dehydrogenase/reductase SDR  27.68 
 
 
251 aa  70.5  0.00000000003  Haloterrigena turkmenica DSM 5511  Archaea  hitchhiker  0.00700482  n/a   
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  28.83 
 
 
246 aa  70.5  0.00000000003  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_007509  Bcep18194_C7160  Short-chain dehydrogenase/reductase SDR  29.96 
 
 
252 aa  70.5  0.00000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3507  short-chain dehydrogenase/reductase SDR  28.04 
 
 
294 aa  70.5  0.00000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1954  short chain dehydrogenase/reductase family oxidoreductase  29.86 
 
 
250 aa  70.5  0.00000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
CP001800  Ssol_2377  short-chain dehydrogenase/reductase SDR  25.77 
 
 
252 aa  69.7  0.00000000004  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_011894  Mnod_3422  short-chain dehydrogenase/reductase SDR  32.96 
 
 
261 aa  69.7  0.00000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6035  Short-chain dehydrogenase/reductase SDR  29.39 
 
 
255 aa  69.7  0.00000000004  Ralstonia eutropha JMP134  Bacteria  normal  0.0967664  n/a   
 
 
-
 
NC_013037  Dfer_0269  short-chain dehydrogenase/reductase SDR  28.21 
 
 
249 aa  70.1  0.00000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.523448  normal  0.530069 
 
 
-
 
NC_008699  Noca_3684  short-chain dehydrogenase/reductase SDR  29.43 
 
 
256 aa  70.1  0.00000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1760  short-chain dehydrogenase/reductase SDR  26.64 
 
 
255 aa  70.1  0.00000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.233538  normal 
 
 
-
 
NC_009921  Franean1_2938  short-chain dehydrogenase/reductase SDR  38.83 
 
 
261 aa  70.1  0.00000000004  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3663  3-ketoacyl-(acyl-carrier-protein) reductase  26.64 
 
 
246 aa  69.7  0.00000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0729  short-chain dehydrogenase/reductase SDR  26.22 
 
 
251 aa  69.7  0.00000000005  Petrotoga mobilis SJ95  Bacteria  normal  0.0262547  n/a   
 
 
-
 
NC_009921  Franean1_1884  short-chain dehydrogenase/reductase SDR  29.78 
 
 
255 aa  69.7  0.00000000005  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_009719  Plav_2627  short-chain dehydrogenase/reductase SDR  28.94 
 
 
268 aa  69.7  0.00000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.335809  normal  0.150749 
 
 
-
 
NC_009338  Mflv_4062  short chain dehydrogenase  29.89 
 
 
257 aa  69.7  0.00000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.171649  normal  0.787909 
 
 
-
 
NC_009784  VIBHAR_07016  oxidoreductase  28.21 
 
 
256 aa  69.7  0.00000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008726  Mvan_4643  short-chain dehydrogenase/reductase SDR  32.33 
 
 
274 aa  69.7  0.00000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1363  short-chain dehydrogenase/reductase SDR  27.41 
 
 
254 aa  69.3  0.00000000006  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.0000027503  n/a   
 
 
-
 
NC_008345  Sfri_0232  acetoin reductases  27.11 
 
 
259 aa  69.3  0.00000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1783  3-ketoacyl-(acyl-carrier-protein) reductase  26.52 
 
 
255 aa  69.3  0.00000000006  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000332127  n/a   
 
 
-
 
NC_013730  Slin_5790  short-chain dehydrogenase/reductase SDR  28.62 
 
 
256 aa  69.3  0.00000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0601767 
 
 
-
 
NC_008786  Veis_2183  short-chain dehydrogenase/reductase SDR  31.3 
 
 
244 aa  69.3  0.00000000007  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.389501 
 
 
-
 
NC_009512  Pput_2606  short-chain dehydrogenase/reductase SDR  30.24 
 
 
275 aa  68.9  0.00000000008  Pseudomonas putida F1  Bacteria  normal  normal  0.43455 
 
 
-
 
NC_009720  Xaut_2692  short-chain dehydrogenase/reductase SDR  29.93 
 
 
272 aa  68.9  0.00000000008  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.108602 
 
 
-
 
NC_009338  Mflv_2071  short-chain dehydrogenase/reductase SDR  32.58 
 
 
258 aa  68.9  0.00000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.70228  normal  0.023925 
 
 
-
 
NC_010718  Nther_2742  3-oxoacyl-(acyl-carrier-protein) reductase  24.47 
 
 
246 aa  68.9  0.00000000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_28720  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  30.08 
 
 
259 aa  68.9  0.00000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.382061  normal  0.0594101 
 
 
-
 
NC_011894  Mnod_2723  short-chain dehydrogenase/reductase SDR  31.03 
 
 
251 aa  68.2  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1429  short-chain dehydrogenase/reductase SDR  25.95 
 
 
256 aa  68.2  0.0000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1654  3-ketoacyl-(acyl-carrier-protein) reductase  26.64 
 
 
246 aa  68.6  0.0000000001  Bacillus cereus G9842  Bacteria  normal  normal  0.0676994 
 
 
-
 
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