| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3260 |
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| Symbol | |
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| ID | 4312119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | - |
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| Start bp | 43648 |
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| End bp | 44415 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638151102 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_775149 |
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| Protein GI | 115358011 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00276657 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.102342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCA CCTACGACTT CAGCGGCCAG GTGGCACTCG TGACCGGCGC AGCTTCCGGC
ATGGGCCTGG CGGCCGCACG CGCATTCGCC AACGCTGGCG CGTCAGTCGC CCTCGCGGAC
ATCAGGGCCG ACGTTCTCGA TGCCGCGACG CAAGAACTTG CGGCAGCGGG CCATCGCGTG
ATCGGCGTGG CCGGCGACAT TTCCGACGAA GCCTACGTCA AGTCGCTCGT CGAGCAAACG
GTGAAGACGT TTGGGCGCCT GGATGCCGCG TTCAACAATG CCGGCATCCA AAGTCCGGCC
GTCGAAACCG CAGACGTCTC GAGCGAGGTG TTCGACCGCA TCAACGCGAT CAACCTGCGC
GGCGTGTGGC TGTGCATGAA ATACGAGCTG ATCCAGATGC GCTCGCAAGG CAATGGTGCG
ATCGTCAACA ACTCGTCTCT CGGCGGCTTG GTCGGTGTGC CGGGTCGAGC GGCATACCAC
GCGACAAAGC ACGGGCTGCT GGGACTGACC AAGAGTGCGG GTCTCGAATA TGCGTCTCAA
GGAATCCGAA TCAATGCTAT CTGCCCCGGT ATCGTGGAAA CGCCAATGGT CGCCGATATG
CTGAAGGGGG AAGCGGCGGT CATGAATGAA ATGATGAAGG ATGTACCGAT TGGCCGACTC
GGCACGGCGC AGGAGATCGC CGACGCCGTT CTGTGGCTAT GTAGTCCCGG CTCCAGCTTC
GTGGTTGGCG TCGCACTCCC GGTCGATGGC GGCTACACCG CACGCTGA
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| Protein sequence | MTITYDFSGQ VALVTGAASG MGLAAARAFA NAGASVALAD IRADVLDAAT QELAAAGHRV
IGVAGDISDE AYVKSLVEQT VKTFGRLDAA FNNAGIQSPA VETADVSSEV FDRINAINLR
GVWLCMKYEL IQMRSQGNGA IVNNSSLGGL VGVPGRAAYH ATKHGLLGLT KSAGLEYASQ
GIRINAICPG IVETPMVADM LKGEAAVMNE MMKDVPIGRL GTAQEIADAV LWLCSPGSSF
VVGVALPVDG GYTAR
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