| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1200 |
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| Symbol | |
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| ID | 6160967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1287028 |
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| End bp | 1287891 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663954 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001790234 |
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| Protein GI | 171057885 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATGC CTGAATTGTC TGGCTCCAAC TTTCCCCACT GGCTGGGCCT CGAAGGCCGC
GTGTGCGTCG TCACCGGCGC GGCCAGCGGC ATCGGCCGCG CGGTGGCCGA GTCGCTCGCC
GCTGCGGGTT CGTGGGTCGC GCTGGTCGAC CGCAACGGCG ACGCGGTGCG GCAGGCCGCA
CACGAGATCG CCGAGTGCGG CGCCCGCGTG CTGGCGCTCG AATGCGACAT CACCGATGAA
GCAGCGGTGG CCGCTGCGGC GCAGCGCGTG CGCAGCGAAC TCGGCCCGGT GGCCGGCCTG
GTCAACAACG CCGGCCTGCT GCGCCCGGGC GCGCTCGAGG ACGTCAGCGT CGCCGAATGG
AATGCGGTGC TGGCGATCAA CCTCACCGGC TACCTGCTGT GCGCGCGCGA GTTCGGCCGC
GACATGCTGG CCGCCGGGCG CGGCAGCATC GTGCACATCG CCTCGGTGTC TGCGCTGCAC
CCGCAGACCC GCAGCGGCGC CTACAGCGCC AGCAAGGCCG GCGTGCTGCT GCTCAACAAG
CAGATGGCCG CCGAGTGGGG CCCGCGTGGC GTGCGCAGCA ATGCGATCTG CCCCGGAATG
ATCCGCACCG CGCTGTCGGC CCGGTTCTAC GAAGAGCCCG GCTTCGAGGC CAAGCGTGCG
GCCGTGACCG CCAGCCGGCG CGTCGGCGAG CCGGTCGACA TCGCCGAGCC CGCGCTGTTC
CTGCTCAGCG ACCGCGCGGG CTACGTCAAT GGCACCGAAC TGGTGGTCGA CGGCGGGCTC
GACTGCATGT TGATGGACAT GGTGCCGCGC CCCGGCTTCA ACCACACCGC CGACGCGGCA
CAGAAGGAAT CGAACCCATC ATGA
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| Protein sequence | MQMPELSGSN FPHWLGLEGR VCVVTGAASG IGRAVAESLA AAGSWVALVD RNGDAVRQAA
HEIAECGARV LALECDITDE AAVAAAAQRV RSELGPVAGL VNNAGLLRPG ALEDVSVAEW
NAVLAINLTG YLLCAREFGR DMLAAGRGSI VHIASVSALH PQTRSGAYSA SKAGVLLLNK
QMAAEWGPRG VRSNAICPGM IRTALSARFY EEPGFEAKRA AVTASRRVGE PVDIAEPALF
LLSDRAGYVN GTELVVDGGL DCMLMDMVPR PGFNHTADAA QKESNPS
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