More than 300 homologs were found in PanDaTox collection
for query gene Mnod_3422 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_3422  short-chain dehydrogenase/reductase SDR  100 
 
 
261 aa  502  1e-141  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0850  putative short-chain dehydrogenase/reductase  43.31 
 
 
266 aa  192  6e-48  Burkholderia xenovorans LB400  Bacteria  normal  0.40253  normal  0.017932 
 
 
-
 
NC_009669  Oant_4587  short-chain dehydrogenase/reductase SDR  46.25 
 
 
264 aa  185  6e-46  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0960385  n/a   
 
 
-
 
NC_007511  Bcep18194_B1218  Short-chain dehydrogenase/reductase SDR  43.56 
 
 
263 aa  165  8e-40  Burkholderia sp. 383  Bacteria  normal  0.150578  normal 
 
 
-
 
NC_007794  Saro_1561  short chain dehydrogenase  43.03 
 
 
516 aa  160  2e-38  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.636243  n/a   
 
 
-
 
NC_008781  Pnap_2712  short-chain dehydrogenase/reductase SDR  40.89 
 
 
286 aa  146  3e-34  Polaromonas naphthalenivorans CJ2  Bacteria  decreased coverage  0.0000174886  normal  0.399546 
 
 
-
 
NC_011901  Tgr7_1954  short chain dehydrogenase/reductase family oxidoreductase  41.34 
 
 
250 aa  145  8.000000000000001e-34  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2865  short-chain dehydrogenase/reductase SDR  41.49 
 
 
255 aa  141  9.999999999999999e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2143  short-chain dehydrogenase/reductase SDR  36.78 
 
 
251 aa  140  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  decreased coverage  0.00162277  normal 
 
 
-
 
NC_008254  Meso_3782  short-chain dehydrogenase/reductase SDR  37.8 
 
 
258 aa  139  6e-32  Chelativorans sp. BNC1  Bacteria  normal  0.143319  n/a   
 
 
-
 
NC_007348  Reut_B5464  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  39.36 
 
 
253 aa  137  2e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.852927  n/a   
 
 
-
 
NC_013595  Sros_7515  short-chain dehydrogenase/reductase SDR  40 
 
 
246 aa  136  4e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1615  short-chain dehydrogenase/reductase SDR  40.82 
 
 
254 aa  134  9.999999999999999e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  0.425319  normal 
 
 
-
 
NC_009484  Acry_0463  short-chain dehydrogenase/reductase SDR  36.72 
 
 
257 aa  133  1.9999999999999998e-30  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2723  short-chain dehydrogenase/reductase SDR  39.92 
 
 
251 aa  133  3.9999999999999996e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0891  short-chain dehydrogenase/reductase SDR  39.27 
 
 
260 aa  132  6e-30  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.375615 
 
 
-
 
NC_011368  Rleg2_4974  short-chain dehydrogenase/reductase SDR  34.65 
 
 
257 aa  131  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.563434  normal 
 
 
-
 
NC_009427  Saro_3607  short-chain dehydrogenase/reductase SDR  41.63 
 
 
261 aa  130  2.0000000000000002e-29  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.197864  n/a   
 
 
-
 
NC_009952  Dshi_1258  short-chain dehydrogenase/reductase SDR  39.17 
 
 
247 aa  129  4.0000000000000003e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.203668  normal 
 
 
-
 
NC_010623  Bphy_4012  short-chain dehydrogenase/reductase SDR  40.49 
 
 
276 aa  129  4.0000000000000003e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2074  short-chain dehydrogenase/reductase SDR  37.74 
 
 
257 aa  129  4.0000000000000003e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  decreased coverage  0.00108701 
 
 
-
 
NC_009338  Mflv_3779  short-chain dehydrogenase/reductase SDR  40.55 
 
 
256 aa  129  4.0000000000000003e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.80625  normal  0.695361 
 
 
-
 
NC_009636  Smed_2445  short-chain dehydrogenase/reductase SDR  37.15 
 
 
257 aa  129  5.0000000000000004e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_1966  short-chain dehydrogenase/reductase SDR  36.99 
 
 
254 aa  129  5.0000000000000004e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1203  short-chain dehydrogenase/reductase SDR  37.79 
 
 
265 aa  128  7.000000000000001e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_2751  short-chain dehydrogenase/reductase SDR  41.04 
 
 
252 aa  129  7.000000000000001e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal 
 
 
-
 
NC_008541  Arth_1790  short-chain dehydrogenase/reductase SDR  39.2 
 
 
255 aa  128  8.000000000000001e-29  Arthrobacter sp. FB24  Bacteria  normal  0.0755029  n/a   
 
 
-
 
NC_013093  Amir_2079  short chain dehydrogenase  37.94 
 
 
255 aa  128  9.000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1005  short-chain dehydrogenase/reductase SDR  33.61 
 
 
260 aa  128  1.0000000000000001e-28  Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.0000302146 
 
 
-
 
NC_013411  GYMC61_2515  short-chain dehydrogenase/reductase SDR  38.21 
 
 
250 aa  128  1.0000000000000001e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_0346  short-chain dehydrogenase/reductase SDR  37.45 
 
 
256 aa  127  1.0000000000000001e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0244456  n/a   
 
 
-
 
NC_009720  Xaut_1138  short-chain dehydrogenase/reductase SDR  41.13 
 
 
255 aa  127  2.0000000000000002e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3001  short-chain dehydrogenase/reductase SDR  39.52 
 
 
249 aa  127  2.0000000000000002e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3510  short-chain dehydrogenase/reductase SDR  40.87 
 
 
251 aa  127  2.0000000000000002e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.439576 
 
 
-
 
NC_009656  PSPA7_3623  short chain dehydrogenase  40.49 
 
 
253 aa  127  2.0000000000000002e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0211534  n/a   
 
 
-
 
NC_013946  Mrub_1897  short-chain dehydrogenase/reductase SDR  37.9 
 
 
247 aa  127  2.0000000000000002e-28  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00100219 
 
 
-
 
NC_011894  Mnod_2724  short-chain dehydrogenase/reductase SDR  41.46 
 
 
275 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_0514  short-chain dehydrogenase/reductase SDR  36.14 
 
 
252 aa  126  3e-28  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_012858  Rleg_7084  gluconate 5-dehydrogenase  35.77 
 
 
255 aa  126  3e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3371  short-chain dehydrogenase/reductase SDR  36.54 
 
 
282 aa  126  4.0000000000000003e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_1402  short-chain dehydrogenase/reductase SDR  35.89 
 
 
249 aa  125  6e-28  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_009767  Rcas_3851  short-chain dehydrogenase/reductase SDR  38.37 
 
 
256 aa  125  7e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.575902  normal  0.466968 
 
 
-
 
NC_007969  Pcryo_0863  short-chain dehydrogenase/reductase SDR  36.8 
 
 
264 aa  124  1e-27  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3603  short-chain dehydrogenase/reductase SDR  37.65 
 
 
249 aa  124  1e-27  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_2695  oxidoreductase, short chain dehydrogenase/reductase family protein  37.01 
 
 
277 aa  124  1e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2620  short-chain dehydrogenase/reductase SDR  38.98 
 
 
256 aa  124  1e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.239755  normal 
 
 
-
 
NC_009921  Franean1_6831  short-chain dehydrogenase/reductase SDR  39.11 
 
 
277 aa  124  1e-27  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_5278  short-chain dehydrogenase/reductase SDR  36.44 
 
 
249 aa  124  2e-27  Pseudomonas putida F1  Bacteria  normal  normal  0.917289 
 
 
-
 
NC_007908  Rfer_4047  3-oxoacyl-(acyl-carrier-protein) reductase  36.48 
 
 
249 aa  124  2e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2060  short chain dehydrogenase  38.06 
 
 
257 aa  124  2e-27  Mycobacterium sp. MCS  Bacteria  normal  0.256692  n/a   
 
 
-
 
NC_010465  YPK_2774  short-chain dehydrogenase/reductase SDR  37.01 
 
 
271 aa  124  2e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2106  short chain dehydrogenase  38.06 
 
 
257 aa  124  2e-27  Mycobacterium sp. KMS  Bacteria  normal  normal  0.077628 
 
 
-
 
NC_009077  Mjls_2043  short chain dehydrogenase  38.06 
 
 
257 aa  124  2e-27  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4775  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  38.87 
 
 
249 aa  123  3e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_5564  3-hydroxybutyrate dehydrogenase  36.61 
 
 
260 aa  123  3e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0154  short-chain dehydrogenase/reductase SDR  38.46 
 
 
255 aa  122  4e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  0.649375  normal  0.270956 
 
 
-
 
NC_009486  Tpet_0479  short-chain dehydrogenase/reductase SDR  35.86 
 
 
252 aa  122  4e-27  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2411  3-hydroxybutyrate dehydrogenase  35.83 
 
 
260 aa  123  4e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.520745  normal  0.812558 
 
 
-
 
NC_007951  Bxe_A3615  putative dehydrogenase  32.73 
 
 
291 aa  122  4e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.427411  normal 
 
 
-
 
NC_009439  Pmen_2680  short chain dehydrogenase  39.27 
 
 
253 aa  123  4e-27  Pseudomonas mendocina ymp  Bacteria  normal  0.313407  normal  0.819387 
 
 
-
 
NC_010159  YpAngola_A1513  oxidoreductase, short chain dehydrogenase/reductase family protein  37.01 
 
 
277 aa  123  4e-27  Yersinia pestis Angola  Bacteria  normal  normal  0.729699 
 
 
-
 
NC_009667  Oant_2067  short-chain dehydrogenase/reductase SDR  37.96 
 
 
246 aa  122  4e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  36.8 
 
 
261 aa  122  4e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0494  short-chain dehydrogenase/reductase SDR  35.86 
 
 
252 aa  123  4e-27  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1536  oxidoreductase  38.62 
 
 
257 aa  122  5e-27  Pseudomonas putida GB-1  Bacteria  normal  normal  0.328678 
 
 
-
 
NC_008699  Noca_2585  short chain dehydrogenase  36.82 
 
 
259 aa  122  6e-27  Nocardioides sp. JS614  Bacteria  normal  0.25122  n/a   
 
 
-
 
NC_008705  Mkms_1754  short-chain dehydrogenase/reductase SDR  37.31 
 
 
257 aa  122  6e-27  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1686  short-chain dehydrogenase/reductase SDR  37.31 
 
 
257 aa  122  6e-27  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2595  short-chain dehydrogenase/reductase SDR  39.18 
 
 
254 aa  122  7e-27  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3704  short-chain dehydrogenase/reductase SDR  38.96 
 
 
257 aa  122  8e-27  Chelativorans sp. BNC1  Bacteria  normal  0.416119  n/a   
 
 
-
 
NC_012912  Dd1591_3232  short-chain dehydrogenase/reductase SDR  38.24 
 
 
248 aa  122  8e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6696  short-chain dehydrogenase/reductase SDR  37.96 
 
 
249 aa  121  9.999999999999999e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.13982  normal 
 
 
-
 
NC_009636  Smed_3124  short chain dehydrogenase  37.1 
 
 
262 aa  121  9.999999999999999e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_2499  short chain dehydrogenase  33.72 
 
 
272 aa  121  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.496805  n/a   
 
 
-
 
NC_009636  Smed_2459  short-chain dehydrogenase/reductase SDR  37.2 
 
 
264 aa  121  9.999999999999999e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2281  short chain dehydrogenase  35.86 
 
 
257 aa  121  9.999999999999999e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.121478 
 
 
-
 
NC_009512  Pput_3759  oxidoreductase  38.21 
 
 
257 aa  121  9.999999999999999e-27  Pseudomonas putida F1  Bacteria  normal  0.108381  normal 
 
 
-
 
NC_009632  SaurJH1_2549  short chain dehydrogenase  33.72 
 
 
272 aa  121  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009427  Saro_3432  short-chain dehydrogenase/reductase SDR  37.6 
 
 
269 aa  121  9.999999999999999e-27  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.115705  n/a   
 
 
-
 
NC_009439  Pmen_2709  oxidoreductase  38.62 
 
 
258 aa  120  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.370968 
 
 
-
 
NC_013501  Rmar_2034  short-chain dehydrogenase/reductase SDR  39.75 
 
 
256 aa  120  1.9999999999999998e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1709  short-chain dehydrogenase/reductase SDR  37.21 
 
 
266 aa  120  1.9999999999999998e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2309  short-chain dehydrogenase/reductase SDR  39.68 
 
 
267 aa  120  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1563  oxidoreductase  37.8 
 
 
257 aa  120  1.9999999999999998e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.256146 
 
 
-
 
NC_012560  Avin_20330  Short-chain dehydrogenase/reductase SDR  37.9 
 
 
281 aa  120  1.9999999999999998e-26  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2364  short-chain dehydrogenase/reductase SDR  38.49 
 
 
252 aa  120  1.9999999999999998e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.927467  normal 
 
 
-
 
NC_013037  Dfer_4305  short-chain dehydrogenase/reductase SDR  36.21 
 
 
251 aa  120  1.9999999999999998e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.400321  normal 
 
 
-
 
NC_012850  Rleg_1601  short-chain dehydrogenase/reductase SDR  37.14 
 
 
258 aa  120  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009954  Cmaq_1757  3-ketoacyl-(acyl-carrier-protein) reductase  34.98 
 
 
302 aa  120  1.9999999999999998e-26  Caldivirga maquilingensis IC-167  Archaea  normal  normal 
 
 
-
 
NC_009338  Mflv_4062  short chain dehydrogenase  36.63 
 
 
257 aa  120  1.9999999999999998e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.171649  normal  0.787909 
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  37.45 
 
 
246 aa  120  3e-26  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  37.45 
 
 
246 aa  120  3e-26  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_009565  TBFG_12873  short chain dehydrogenase  37.19 
 
 
258 aa  120  3e-26  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0631  short-chain dehydrogenase/reductase SDR  39.6 
 
 
265 aa  120  3e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.76513  n/a   
 
 
-
 
NC_008578  Acel_1849  short chain dehydrogenase  38.62 
 
 
255 aa  120  3e-26  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.838313 
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  39.92 
 
 
239 aa  119  3e-26  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4406  short-chain dehydrogenase/reductase SDR  38.93 
 
 
253 aa  119  3.9999999999999996e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.410481  normal 
 
 
-
 
NC_010681  Bphyt_1318  glucose-1-dehydrogenase  37.6 
 
 
248 aa  119  3.9999999999999996e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.573048  normal  0.212962 
 
 
-
 
NC_013169  Ksed_19760  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  39.44 
 
 
256 aa  119  3.9999999999999996e-26  Kytococcus sedentarius DSM 20547  Bacteria  decreased coverage  0.000927245  normal  0.0200652 
 
 
-
 
NC_009654  Mmwyl1_2434  short-chain dehydrogenase/reductase SDR  35.37 
 
 
252 aa  119  3.9999999999999996e-26  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.000391653  normal  0.106705 
 
 
-
 
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