| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2397 |
|---|
| Symbol | |
|---|
| ID | 1184049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2646227 |
|---|
| End bp | 2646991 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637393773 |
|---|
| Product | oxidoreductase, short chain dehydrogenase/reductase family |
|---|
| Protein accession | NP_792212 |
|---|
| Protein GI | 28869593 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0465114 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTTT TTCGACTTGA TGGTCAGGTG GCCTTTGTGA CCGGCGCCGG CAGCGGCATT
GGCCAGGCCA TTGCTGTCGG CCTTGCCGAG GCCGGGGCGG ACGTGGCGTG TTTTGACTTG
CCGGGCAGCA CAGGCATCGG CAGCACCGTA GAGCGCATCA ACGCACTGGG CCGACGCGCC
CTTGCCCTGC AGGGCACGGT CACCGACCGC GCAACGCTGG ATGCCGCCAT CGCGCGCACC
GAAACCGAAC TGGGCGCACT TAGCGTGGCC GTCAACTGCG CCGGCATCGC CAACGCCCAG
GCCGCCGAAG AGCTGGAGTT GCAACGCTGG CAAACCATGC TGGACATCAA CCTGACCGGC
ATCTTTCTCA GTTGCCAAGC GCAGGCGGCG GTCATGCTGC CGCGCGGCAA AGGCGCCATC
GTCAACATCG CCTCGATGTC CGGCAGTATC GTCAATCGCG GGCTGTTGCA AGCGCACTAC
AACGCCTCGA AAGCCGGCGT CATCCACCTG AGCAAAAGCC TGGCGATGGA GTGGGCGAAC
AAGGGCTTGC GGGTCAACTG CATCAGCCCC GGCTACACCG CCACCCCCAT GAATTCACGC
CCGGAAGTGG CCGAGCAAGT GAAGATATTC GAGCAGACCA CGCCCATGGG CCGTATGGCC
AGCGTGGACG AAATGGTCGG CCCGGCGGTC TTTCTGGTCA GTCAGGCGTC ATCGTTTTGT
ACCGGCGTCG ACCTGCTGGT GGACGGCGGC TTTGTCTGCT GGTGA
|
|---|
| Protein sequence | MQLFRLDGQV AFVTGAGSGI GQAIAVGLAE AGADVACFDL PGSTGIGSTV ERINALGRRA
LALQGTVTDR ATLDAAIART ETELGALSVA VNCAGIANAQ AAEELELQRW QTMLDINLTG
IFLSCQAQAA VMLPRGKGAI VNIASMSGSI VNRGLLQAHY NASKAGVIHL SKSLAMEWAN
KGLRVNCISP GYTATPMNSR PEVAEQVKIF EQTTPMGRMA SVDEMVGPAV FLVSQASSFC
TGVDLLVDGG FVCW
|
|---|
| |