| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1004 |
|---|
| Symbol | |
|---|
| ID | 4078224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1074159 |
|---|
| End bp | 1074863 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638006308 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_612999 |
|---|
| Protein GI | 99080845 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.159825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGCA CTGTTTTGGT TACGGGCGGC ACCTATGGTC TTGGACTGGC TATCGCGGCG
CGGTTTGCAC CTGACCACAA TGTCCTGCGC TCTTTTAAGA AGACGCCGCC TCGCGACGAT
CTGGAGGCGC AACCCAACGT CGTCTCCTGC GCTTGCGACT TGCTGCAGGA CGGTGCAGCC
GAGGATCTTG TCGCGCAGGC CATGGGTCAG TTTGGCCGCA TCGATGTCAT CGTGAACAAC
GCGGGCCTCG TGCAGAGCAC GCCCAAGGCG CAGTTTGATC TCTCAGAGCA CCGGAAGGTG
TTTGAACTCA ACACCATTGC GCCGCAGGCC GTCCTGGCGG CCGCCTTGCC GCATTTGCGT
CCGGGGGCCG CGATCGTCAA TATTTCCTCG GTCAATGCCA CCCTGCCGCC ACGCGACGCG
GCCAGCTATG GGGCGAGCAA GGCTGCGCTC AACCTCTGGA CCAAAGCCAT GGCAAAGGAA
CTTGGCCCCG AAGGAATCCG CGTCAATGCA GTGGCGCCCG GCGCCATCAA TGTGCCGGAG
GCGCCTCGCT CCGAAGAGCT CACGCAGATT TTTGTGAAAG ACACGGCGCT GGGGCGCATC
GGCACACCCG ACGACATCGC CAAGGCCGTG CGTTTTCTCG CCTCCGAGGA GGCGAGCTTT
ATCACTGGCG AAATCCTGAC GGTCGCGGGC GGCTACCGGC TCTGA
|
|---|
| Protein sequence | MMRTVLVTGG TYGLGLAIAA RFAPDHNVLR SFKKTPPRDD LEAQPNVVSC ACDLLQDGAA
EDLVAQAMGQ FGRIDVIVNN AGLVQSTPKA QFDLSEHRKV FELNTIAPQA VLAAALPHLR
PGAAIVNISS VNATLPPRDA ASYGASKAAL NLWTKAMAKE LGPEGIRVNA VAPGAINVPE
APRSEELTQI FVKDTALGRI GTPDDIAKAV RFLASEEASF ITGEILTVAG GYRL
|
|---|
| |