More than 300 homologs were found in PanDaTox collection
for query gene Swit_4910 on replicon NC_009508
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009508  Swit_4910  dehydrogenase  100 
 
 
136 aa  271  2.0000000000000002e-72  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.271824 
 
 
-
 
NC_009511  Swit_1570  short-chain dehydrogenase/reductase SDR  82.35 
 
 
248 aa  237  5e-62  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0042  short-chain dehydrogenase/reductase SDR  59.26 
 
 
251 aa  163  8e-40  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1911  short-chain dehydrogenase/reductase SDR  57.04 
 
 
249 aa  155  2e-37  Cupriavidus metallidurans CH34  Bacteria  normal  0.250499  normal 
 
 
-
 
NC_007348  Reut_B5854  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  56.3 
 
 
249 aa  152  1e-36  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1781  short-chain dehydrogenase/reductase SDR  60 
 
 
250 aa  151  2.9999999999999998e-36  Sphingomonas wittichii RW1  Bacteria  normal  0.0218692  normal 
 
 
-
 
NC_012791  Vapar_0129  short-chain dehydrogenase/reductase SDR  55.64 
 
 
254 aa  144  5e-34  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0358  short-chain dehydrogenase/reductase SDR  52.59 
 
 
254 aa  139  9.999999999999999e-33  Polaromonas sp. JS666  Bacteria  normal  normal  0.421382 
 
 
-
 
NC_009783  VIBHAR_02553  hypothetical protein  53.08 
 
 
244 aa  131  3e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_4740  short-chain dehydrogenase/reductase SDR  54.55 
 
 
272 aa  123  1e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2546  short-chain dehydrogenase/reductase SDR  51.88 
 
 
245 aa  114  3e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3341  short-chain dehydrogenase/reductase SDR  44.7 
 
 
245 aa  107  4.0000000000000004e-23  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000200768  n/a   
 
 
-
 
NC_009719  Plav_2616  short-chain dehydrogenase/reductase SDR  44.2 
 
 
263 aa  102  2e-21  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.721614  normal  0.0286411 
 
 
-
 
NC_009511  Swit_1661  short-chain dehydrogenase/reductase SDR  44.12 
 
 
256 aa  91.7  3e-18  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.1817 
 
 
-
 
NC_007953  Bxe_C0900  putative short-chain dehydrogenase/reductase  39.01 
 
 
263 aa  90.9  6e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.285387 
 
 
-
 
NC_009720  Xaut_1138  short-chain dehydrogenase/reductase SDR  44.53 
 
 
255 aa  88.6  3e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7533  putative short-chain dehydrogenase/reductase (SDR) family protein  40.27 
 
 
260 aa  87  8e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.436841  normal 
 
 
-
 
NC_011894  Mnod_0228  short-chain dehydrogenase/reductase SDR  41.04 
 
 
252 aa  86.3  1e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.753255  n/a   
 
 
-
 
NC_010676  Bphyt_5163  short-chain dehydrogenase/reductase SDR  37.93 
 
 
266 aa  85.5  2e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  0.752171  normal 
 
 
-
 
NC_007778  RPB_0560  short-chain dehydrogenase/reductase SDR  39.31 
 
 
260 aa  85.1  3e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.139698  normal  0.0340576 
 
 
-
 
NC_008261  CPF_1154  7-alpha-hydroxysteroid dehydrogenase  37.31 
 
 
253 aa  85.1  3e-16  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000294561  n/a   
 
 
-
 
NC_007952  Bxe_B1525  Short-chain dehydrogenase/reductase SDR  37.93 
 
 
266 aa  84.3  4e-16  Burkholderia xenovorans LB400  Bacteria  normal  0.191117  normal 
 
 
-
 
NC_008262  CPR_0991  7-alpha-hydroxysteroid dehydrogenase  37.31 
 
 
253 aa  84.3  5e-16  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0553  short-chain dehydrogenase/reductase SDR  40.82 
 
 
261 aa  84  7e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1938  short-chain dehydrogenase/reductase SDR  41.67 
 
 
252 aa  83.2  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0128368 
 
 
-
 
NC_011898  Ccel_2089  short-chain dehydrogenase/reductase SDR  38.06 
 
 
246 aa  82.4  0.000000000000002  Clostridium cellulolyticum H10  Bacteria  normal  0.0163129  n/a   
 
 
-
 
NC_009523  RoseRS_4552  short-chain dehydrogenase/reductase SDR  36.64 
 
 
246 aa  81.6  0.000000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_0174  short-chain dehydrogenase/reductase SDR  38.97 
 
 
255 aa  82  0.000000000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  36.64 
 
 
246 aa  81.6  0.000000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_013744  Htur_4226  short-chain dehydrogenase/reductase SDR  35.29 
 
 
255 aa  81.3  0.000000000000005  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_011004  Rpal_0480  short-chain dehydrogenase/reductase SDR  39.31 
 
 
260 aa  80.9  0.000000000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.674549  n/a   
 
 
-
 
NC_013131  Caci_6492  short-chain dehydrogenase/reductase SDR  43.33 
 
 
241 aa  80.5  0.000000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3757  short-chain dehydrogenase/reductase SDR  43.26 
 
 
267 aa  79.7  0.00000000000001  Caulobacter sp. K31  Bacteria  normal  0.537851  normal 
 
 
-
 
NC_009077  Mjls_2654  short-chain dehydrogenase/reductase SDR  41.84 
 
 
248 aa  79  0.00000000000002  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2625  short-chain dehydrogenase/reductase SDR  41.84 
 
 
248 aa  79  0.00000000000002  Mycobacterium sp. MCS  Bacteria  normal  0.627882  n/a   
 
 
-
 
NC_008705  Mkms_2669  short-chain dehydrogenase/reductase SDR  41.84 
 
 
248 aa  79  0.00000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.412658  normal  0.910239 
 
 
-
 
NC_011901  Tgr7_0328  pteridine reductase  39.1 
 
 
252 aa  78.6  0.00000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0651  short chain dehydrogenase/reductase family oxidoreductase  33.33 
 
 
252 aa  78.6  0.00000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1953  short chain dehydrogenase/reductase family oxidoreductase  35.04 
 
 
269 aa  77.8  0.00000000000004  Pseudomonas putida KT2440  Bacteria  normal  0.660502  hitchhiker  0.0000443121 
 
 
-
 
NC_007952  Bxe_B2697  putative short-chain type dehydrogenase/reductase  39.1 
 
 
247 aa  78.2  0.00000000000004  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3288  short-chain dehydrogenase/reductase SDR  37.04 
 
 
264 aa  77.4  0.00000000000006  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.197949 
 
 
-
 
NC_008740  Maqu_2513  short-chain dehydrogenase/reductase SDR  39.13 
 
 
262 aa  77.4  0.00000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp2921  pteridine reductase  40.44 
 
 
259 aa  77.4  0.00000000000007  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007614  Nmul_A0336  pteridine reductase  38.52 
 
 
246 aa  76.3  0.0000000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2484  short-chain dehydrogenase/reductase SDR  35.04 
 
 
249 aa  76.6  0.0000000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.675189  normal  0.198967 
 
 
-
 
NC_008699  Noca_1846  short-chain dehydrogenase/reductase SDR  36.36 
 
 
241 aa  76.6  0.0000000000001  Nocardioides sp. JS614  Bacteria  normal  0.0202435  n/a   
 
 
-
 
NC_013510  Tcur_0214  short-chain dehydrogenase/reductase SDR  37.21 
 
 
252 aa  75.9  0.0000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl2775  pteridine reductase  40.44 
 
 
259 aa  75.5  0.0000000000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007404  Tbd_0924  3-oxoacyl-(acyl-carrier protein) reductase  37.78 
 
 
260 aa  75.9  0.0000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.171605  normal  0.571441 
 
 
-
 
NC_011661  Dtur_0288  short-chain dehydrogenase/reductase SDR  35.77 
 
 
249 aa  75.5  0.0000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  41.18 
 
 
254 aa  75.9  0.0000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4184  short-chain dehydrogenase/reductase SDR  35.04 
 
 
255 aa  75.9  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3175  short-chain dehydrogenase/reductase SDR  42.73 
 
 
252 aa  75.9  0.0000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.49109  normal  0.0150297 
 
 
-
 
NC_009524  PsycPRwf_0909  short-chain dehydrogenase/reductase SDR  39.37 
 
 
244 aa  75.9  0.0000000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  0.271894  normal 
 
 
-
 
NC_011894  Mnod_3752  3-ketoacyl-(acyl-carrier-protein) reductase  40.43 
 
 
268 aa  75.5  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3817  3-oxoacyl-(acyl-carrier-protein) reductase  35.07 
 
 
247 aa  75.5  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.00000000000000217117  n/a   
 
 
-
 
NC_013512  Sdel_2101  short-chain dehydrogenase/reductase SDR  32.06 
 
 
229 aa  75.1  0.0000000000003  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3160  short-chain dehydrogenase/reductase SDR  38.85 
 
 
248 aa  75.1  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.328176  n/a   
 
 
-
 
NC_007948  Bpro_3692  short chain dehydrogenase  41.3 
 
 
256 aa  75.1  0.0000000000003  Polaromonas sp. JS666  Bacteria  normal  0.31077  normal  0.893626 
 
 
-
 
NC_009380  Strop_0675  short-chain dehydrogenase/reductase SDR  36.88 
 
 
246 aa  75.1  0.0000000000003  Salinispora tropica CNB-440  Bacteria  normal  0.234131  normal  0.723932 
 
 
-
 
NC_013037  Dfer_5738  short-chain dehydrogenase/reductase SDR  33.81 
 
 
257 aa  75.1  0.0000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.759988  normal  0.0474831 
 
 
-
 
NC_009511  Swit_0925  short-chain dehydrogenase/reductase SDR  33.83 
 
 
251 aa  74.7  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_1276  short-chain dehydrogenase/reductase SDR  34.81 
 
 
237 aa  74.3  0.0000000000005  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_013171  Apre_0544  short-chain dehydrogenase/reductase SDR  35.29 
 
 
242 aa  74.3  0.0000000000005  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1089  short-chain dehydrogenase/reductase SDR  43.07 
 
 
259 aa  74.3  0.0000000000005  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0332234  normal 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  40.44 
 
 
254 aa  73.9  0.0000000000007  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_013061  Phep_4018  short-chain dehydrogenase/reductase SDR  33.09 
 
 
254 aa  73.6  0.0000000000008  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_0162  short-chain dehydrogenase/reductase SDR  38.74 
 
 
246 aa  73.6  0.0000000000008  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1604  short-chain dehydrogenase/reductase SDR  38.41 
 
 
248 aa  73.6  0.0000000000009  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2407  short chain dehydrogenase  41.18 
 
 
278 aa  73.6  0.0000000000009  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0415  short-chain dehydrogenase/reductase SDR  33.81 
 
 
257 aa  73.2  0.000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.560297 
 
 
-
 
NC_009675  Anae109_3601  short-chain dehydrogenase/reductase SDR  40 
 
 
248 aa  72.8  0.000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0671511 
 
 
-
 
NC_007336  Reut_C6224  Short-chain dehydrogenase/reductase SDR  39.13 
 
 
255 aa  72.8  0.000000000001  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.0000552131  n/a   
 
 
-
 
NC_008148  Rxyl_0531  short-chain dehydrogenase/reductase SDR  39.86 
 
 
250 aa  73.6  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.147758  n/a   
 
 
-
 
NC_013922  Nmag_2910  short-chain dehydrogenase/reductase SDR  35.04 
 
 
251 aa  73.2  0.000000000001  Natrialba magadii ATCC 43099  Archaea  normal  0.640216  n/a   
 
 
-
 
NC_010513  Xfasm12_0800  pteridine reductase  35.56 
 
 
245 aa  72.8  0.000000000001  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3542  short-chain dehydrogenase/reductase SDR  39.55 
 
 
261 aa  72.8  0.000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  0.0769381  normal  0.815127 
 
 
-
 
NC_010577  XfasM23_0711  pteridine reductase  35.56 
 
 
245 aa  72.8  0.000000000001  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4589  short-chain dehydrogenase/reductase SDR  38.41 
 
 
254 aa  73.2  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.496264  normal 
 
 
-
 
NC_009441  Fjoh_4121  short-chain dehydrogenase/reductase SDR  33.1 
 
 
254 aa  72.4  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311135  n/a   
 
 
-
 
NC_010505  Mrad2831_0334  3-ketoacyl-(acyl-carrier-protein) reductase  39.01 
 
 
268 aa  72  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1360  3-oxoacyl-(acyl-carrier-protein) reductase  35.11 
 
 
243 aa  72.4  0.000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  decreased coverage  0.00000000468393  normal  0.0479743 
 
 
-
 
NC_009524  PsycPRwf_1006  short chain dehydrogenase  39.1 
 
 
253 aa  72.4  0.000000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.0000281072 
 
 
-
 
NC_011071  Smal_3430  pteridine reductase  37.12 
 
 
245 aa  72  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.425485  decreased coverage  0.00917749 
 
 
-
 
NC_011146  Gbem_1433  short-chain dehydrogenase/reductase SDR  35.82 
 
 
237 aa  72.4  0.000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.10295  n/a   
 
 
-
 
NC_010320  Teth514_1808  short-chain dehydrogenase/reductase SDR  35.77 
 
 
245 aa  72.4  0.000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0646  short-chain dehydrogenase/reductase SDR  35.29 
 
 
260 aa  72.8  0.000000000002  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_010335  Caul_5136  short-chain dehydrogenase/reductase SDR  35.07 
 
 
254 aa  72.4  0.000000000002  Caulobacter sp. K31  Bacteria  normal  0.708802  normal 
 
 
-
 
NC_013159  Svir_17920  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  35.61 
 
 
251 aa  72  0.000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.328183  normal  0.355358 
 
 
-
 
NC_013922  Nmag_1308  short-chain dehydrogenase/reductase SDR  34.29 
 
 
257 aa  72.4  0.000000000002  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009512  Pput_2698  short-chain dehydrogenase/reductase SDR  38.35 
 
 
253 aa  72.4  0.000000000002  Pseudomonas putida F1  Bacteria  normal  0.16282  normal 
 
 
-
 
NC_011831  Cagg_0630  3-oxoacyl-(acyl-carrier-protein) reductase  35.11 
 
 
246 aa  72.8  0.000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2595  short-chain dehydrogenase/reductase SDR  36.5 
 
 
254 aa  72  0.000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2840  3-oxoacyl-(acyl-carrier-protein) reductase  36.3 
 
 
250 aa  71.6  0.000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2932  3-oxoacyl-(acyl-carrier-protein) reductase  36.3 
 
 
250 aa  71.6  0.000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2034  short-chain dehydrogenase/reductase SDR  37.23 
 
 
256 aa  72  0.000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2591  short-chain dehydrogenase/reductase SDR  38.46 
 
 
250 aa  71.6  0.000000000003  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.573259 
 
 
-
 
NC_013739  Cwoe_2494  short-chain dehydrogenase/reductase SDR  35.21 
 
 
291 aa  72  0.000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.60014  normal  0.0881916 
 
 
-
 
NC_010338  Caul_0573  short-chain dehydrogenase/reductase SDR  40 
 
 
260 aa  72  0.000000000003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4672  putative 3-oxoacyl-(acyl-carrier-protein) reductase  36.5 
 
 
253 aa  71.6  0.000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.572467  normal 
 
 
-
 
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