| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4121 |
|---|
| Symbol | |
|---|
| ID | 5094031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 4953275 |
|---|
| End bp | 4954039 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644743540 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001196448 |
|---|
| Protein GI | 146301857 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.311135 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCAT TACAAAATAA AAAAGCAGTT ATAACAGGAG GCGGAAGCGG GATTGGAAGA
GCAATTGCGG CCTTGTTTGC CAAACAGGGA GCAGAAGTTC ATATTATTGA TTTATCTATT
GAAAGTGCAC AGGATGCTGT TGAAGAAATT AAAAATGCAG GAGGAAACGT TTTTTCGTAT
GCCTGTAATG TTTCCAGCCA AGCTGATGTT AAGGCAACTT TCGAAAAGAT CGGAAATATA
AATATCTTAA TCAATAACGC CGGAATCGCA AATGTTGGTA AAGTTGACAC GACTTCTGAA
GCTGATTTTG ACCGTGTAAT GGATGTAAAT GTAAAAGGAG TTTACAACTG TTTGTTTGCA
GCGATCCCAC AATTCCGACT TTCAAATGGC GGTGTAATCT TAAACATGGC GTCAATTGCG
GCGTGGGTTG GAATCTCAGA TCGTTTTGCG TATTCAACTG CAAAAGGCGC TGTTATGGCG
ATGACTTTGT CAGTAGCGAG AGATTATTTA AGTGAAAATA TAAGATGTAA TTCTATTTCT
CCGGCAAGAG TTCACACGCC TTTTGTGGAC GGATTTATTT CTAAAAATTA CGCTGGAAAA
GAAGAAGAAA TGTTCGATAA ACTTTCTAAA TCACAGCCAA TAGGACGTAT GGGAAAACCA
GACGAAATTG CCGCTCTTGC TTTATACTTA TGCAGTGAAG AAGCTGGATT TATCACCGGA
TGCGATTACC CAATCGACGG AGGATTTATT AAGTTAAATA ATTAA
|
|---|
| Protein sequence | MFSLQNKKAV ITGGGSGIGR AIAALFAKQG AEVHIIDLSI ESAQDAVEEI KNAGGNVFSY
ACNVSSQADV KATFEKIGNI NILINNAGIA NVGKVDTTSE ADFDRVMDVN VKGVYNCLFA
AIPQFRLSNG GVILNMASIA AWVGISDRFA YSTAKGAVMA MTLSVARDYL SENIRCNSIS
PARVHTPFVD GFISKNYAGK EEEMFDKLSK SQPIGRMGKP DEIAALALYL CSEEAGFITG
CDYPIDGGFI KLNN
|
|---|
| |