| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0042 |
|---|
| Symbol | |
|---|
| ID | 5745578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 47755 |
|---|
| End bp | 48510 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641295105 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001561074 |
|---|
| Protein GI | 160895492 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAAC TCTCCCATCC GCCATTGCAA GACAGAATCG CCGTCGTCAC CGGCGCCAGC
AGCGGCATAG GCGCCGCCAC GGCGCGGGCC CTGGCCCGCG AGGGCGCCAC CGTCGTGATC
GGCTACCACC AGGGCCGCGA CCGCGCCCAG GCGCTGCGCG AGGAACTGCC GGGCAGCCAC
CACACGCTGC AGCTGTCGCT GCAAGACGAG GCCAGCCACG CCACCGCCGC CCAGTGGCTG
CAGCAGCACC TGGGCCGGGT GGACCTGCTG GTCAACTGCG CGGGCTTCAC CGAGCGCATC
GCGCACGCGC AGATCGATGC GCTGGAGCCC GCTCTGTTCA ACCGCATCCT GTGCGCCAAC
GTGGGCGGCA CCTATGCCGT GACGCGGGCC CTGCTGCCGC TGCTGCGCGC CTCGCAGGAC
GCCGCCGTGG TCAACGTGTC CTCGGTCTCC GCCTTCACGG GCCTGGGCAG CAACATGGCC
TATTGCGCCG CCAAGGCCGC GCTGGACACG CTGACGGTGT CCATGGCGCG CGCCTTCGGC
CCGGTGCGCT TTCTCTGCGT CTCGCCCGCC GCCGTGGACA CCGGTTTCGT GGAGGGCCGC
AGCCGCCAGG AGCTGGAGAA AAAGGCCGCG CACACGCCGC TGGGCCGCGT GGTCGAGCCC
GGCGATGTGG CGCAGGCCAT CCTCGCCTGC GCCACGCATC TGCGCACGGC CACGGGCACG
CGCATCGTGA TCGACGGCGG CCACAGCCTC GGTTGA
|
|---|
| Protein sequence | MMQLSHPPLQ DRIAVVTGAS SGIGAATARA LAREGATVVI GYHQGRDRAQ ALREELPGSH
HTLQLSLQDE ASHATAAQWL QQHLGRVDLL VNCAGFTERI AHAQIDALEP ALFNRILCAN
VGGTYAVTRA LLPLLRASQD AAVVNVSSVS AFTGLGSNMA YCAAKAALDT LTVSMARAFG
PVRFLCVSPA AVDTGFVEGR SRQELEKKAA HTPLGRVVEP GDVAQAILAC ATHLRTATGT
RIVIDGGHSL G
|
|---|
| |