| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2616 |
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| Symbol | |
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| ID | 5453378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2823336 |
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| End bp | 2824127 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640878193 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001413881 |
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| Protein GI | 154253057 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.721614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.0286411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCGC TCAAGAACAA GGTTGCCATC GTCACAGGCT CGGCCACCGG CCTCGGCGCC
GCCGTCGCGC TGCAGCTCGC GGACAAGGGC TGCAATGTCG TCATCAACTA CACAAAAAGC
GAAACCGAAG CGAAGGAAAC GCTTGCCGCC TGTCAGGAAA AGGGCGTCGA GGCGATCCTC
GCGCAAGGCG ATGTCGGCGA GGATGCCGAT TGCCGCCGCA TCGTGGATGA AACCGTGAAG
AAATGGGGCC GCGTCGATGT GCTGGTCAAC AATGCGGGCG GCACGAAATT CGCCAACCAT
GCCGAGCTCG ACGAACTGAA CGCCGAAGAC TTCCTCTGGA TCTACAAGGT GAACGTCGTC
GGCGCCTATC AGATGATCCG CGCCTGCGCG CCGCATATGA AAGAGGCGGG CAAGGGCTCG
GTGGTGAACG TCTCGTCCAT CGCGGGCGTC ACAGGCATCG GCTCTTCCGT CGCCTATGCC
GCATCGAAGG GCGCGCTCAA CACCATGACG CTCTCGCTCG CCCGCTCGCT CGCTCCGAAG
ATCCGCGTCA ACGCGGTCTG CCCCGGCTTC ATCGGCACGC GCTGGTTCTC GGATCGCTTC
GGTAGCCAGA CCTTTGAAGG CATCAAGCGC CAGCAGGAAG AATCCACCCC CCTCCAGCGC
GCCGGCACAC CGGAAGACAT CGCCACTGCC GTCGTCTTCT TCTGCGGCGA AGGCTCCGAC
CACATCACCG GCGAAACATT GATCACCGAC GCCGGAATGC ACCTCGGCTT CGCTCCGCTG
ACGGCGCGGT AA
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| Protein sequence | MSALKNKVAI VTGSATGLGA AVALQLADKG CNVVINYTKS ETEAKETLAA CQEKGVEAIL
AQGDVGEDAD CRRIVDETVK KWGRVDVLVN NAGGTKFANH AELDELNAED FLWIYKVNVV
GAYQMIRACA PHMKEAGKGS VVNVSSIAGV TGIGSSVAYA ASKGALNTMT LSLARSLAPK
IRVNAVCPGF IGTRWFSDRF GSQTFEGIKR QQEESTPLQR AGTPEDIATA VVFFCGEGSD
HITGETLITD AGMHLGFAPL TAR
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