| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3692 |
|---|
| Symbol | |
|---|
| ID | 4013642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 3904022 |
|---|
| End bp | 3904792 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637943347 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_550491 |
|---|
| Protein GI | 91789539 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.31077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.893626 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGCGC ATAGCCAGCA AGGACTTGTG CAGGGCCGCC GCATCCTGGT GACCGGTGCG
GCCCGCGGTT TGGGTTTTTC CTTTGCCCGC ACGCTGTGCG AGAGCGGCGC CCGGGTGGTG
CTGGCCGATC TGCGCGAGGA GTTGCTGCAG CAGTCCGTTG CAACCCTGCG CGCAGAAGGC
TTTGACGCCA GCGGCGTGGC GGTGGATGTG GGCGACCCGG CATCGATCCA GTGCTGCGCC
GAGCAGGCGG TGGCCAACCT GGGCGGCCTG GACGGTCTCG TCAACAACGC CGCGGTGACC
GACTCCGGAG GTCGCGGCAT GGACGACATC GAGATCGCCA AGTGGGACCA GGTGATGAAC
GTCAACGTGC GCGGCACCTG GCTCATGACG CGTGCCTGTC GCCCCGCGCT GCGCGCCGGT
GGCCGCGGCG CCATTGTCAA CCTGGCTTCA GATACTGCGA TGTGGGGTGC GCCCAATCTG
CTGGCCTATG TGGCCAGCAA GGGCGCCGTG ATTGCGATGA CGCATTCGCT GGCCCGCGAG
CTGGGCCCCG ACAACATCAC CGTCAATGCC ATCGCCCCCG GCTTGGTGTT GGTGGAAGCC
ACGCAGTACG TGCCCGAGTC GCGGCACCGT CAATACATCG ACCAGCGCGC GCTCCAGCGC
GAGCAGATGC CCGAGGACGT CTCCGGCGCG GTGCTCTATG CGCTATCCGA TCTGGCCCGG
TTCGTCACCG GCCAGGTTCT CGCCGTCAAT GGCGGCTTCG TCATGCGCTG A
|
|---|
| Protein sequence | MVAHSQQGLV QGRRILVTGA ARGLGFSFAR TLCESGARVV LADLREELLQ QSVATLRAEG
FDASGVAVDV GDPASIQCCA EQAVANLGGL DGLVNNAAVT DSGGRGMDDI EIAKWDQVMN
VNVRGTWLMT RACRPALRAG GRGAIVNLAS DTAMWGAPNL LAYVASKGAV IAMTHSLARE
LGPDNITVNA IAPGLVLVEA TQYVPESRHR QYIDQRALQR EQMPEDVSGA VLYALSDLAR
FVTGQVLAVN GGFVMR
|
|---|
| |