More than 300 homologs were found in PanDaTox collection
for query gene Ssed_1470 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1470  short-chain dehydrogenase/reductase SDR  100 
 
 
255 aa  521  1e-147  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00108636  hitchhiker  0.000219096 
 
 
-
 
NC_010506  Swoo_3206  short-chain dehydrogenase/reductase SDR  85.49 
 
 
255 aa  455  1e-127  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0196374  unclonable  0.0000000191957 
 
 
-
 
NC_009901  Spea_2786  short-chain dehydrogenase/reductase SDR  81.18 
 
 
257 aa  428  1e-119  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0573631  n/a   
 
 
-
 
NC_009438  Sputcn32_1393  short-chain dehydrogenase/reductase SDR  82.11 
 
 
247 aa  417  1e-116  Shewanella putrefaciens CN-32  Bacteria  decreased coverage  0.0083444  n/a   
 
 
-
 
NC_004347  SO_1674  short chain dehydrogenase family protein  82.52 
 
 
247 aa  417  9.999999999999999e-116  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2600  short-chain dehydrogenase/reductase SDR  82.11 
 
 
258 aa  416  9.999999999999999e-116  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0000480386  hitchhiker  0.000000443735 
 
 
-
 
NC_008322  Shewmr7_2667  short-chain dehydrogenase/reductase SDR  82.11 
 
 
258 aa  416  9.999999999999999e-116  Shewanella sp. MR-7  Bacteria  hitchhiker  0.000108179  normal  0.0377265 
 
 
-
 
NC_008577  Shewana3_2774  short chain dehydrogenase family protein  82.11 
 
 
258 aa  416  9.999999999999999e-116  Shewanella sp. ANA-3  Bacteria  normal  0.051909  hitchhiker  0.000224975 
 
 
-
 
NC_009665  Shew185_1486  short-chain dehydrogenase/reductase SDR  81.3 
 
 
247 aa  412  1e-114  Shewanella baltica OS185  Bacteria  normal  0.0978937  n/a   
 
 
-
 
NC_009997  Sbal195_1522  short-chain dehydrogenase/reductase SDR  80.89 
 
 
247 aa  411  1e-114  Shewanella baltica OS195  Bacteria  normal  0.0183678  normal  0.814955 
 
 
-
 
NC_009052  Sbal_1491  short-chain dehydrogenase/reductase SDR  81.3 
 
 
247 aa  412  1e-114  Shewanella baltica OS155  Bacteria  decreased coverage  0.000349992  n/a   
 
 
-
 
NC_011663  Sbal223_2860  short-chain dehydrogenase/reductase SDR  81.3 
 
 
247 aa  412  1e-114  Shewanella baltica OS223  Bacteria  normal  0.0264369  hitchhiker  0.0000000000470617 
 
 
-
 
NC_009092  Shew_2553  short-chain dehydrogenase/reductase SDR  80.99 
 
 
256 aa  412  1e-114  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1372  short chain dehydrogenase family protein  65.85 
 
 
274 aa  340  1e-92  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0570365 
 
 
-
 
NC_008345  Sfri_1335  short chain dehydrogenase family protein  60.82 
 
 
247 aa  320  1.9999999999999998e-86  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00551908  n/a   
 
 
-
 
NC_008554  Sfum_3431  short-chain dehydrogenase/reductase SDR  44.83 
 
 
238 aa  193  2e-48  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  hitchhiker  0.000136725 
 
 
-
 
NC_008639  Cpha266_0157  short-chain dehydrogenase/reductase SDR  37.08 
 
 
249 aa  170  2e-41  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2296  short-chain dehydrogenase/reductase SDR  38.36 
 
 
238 aa  166  5e-40  Geobacter sp. M21  Bacteria  n/a    normal  0.0366896 
 
 
-
 
NC_013743  Htur_2534  short-chain dehydrogenase/reductase SDR  34.75 
 
 
247 aa  150  1e-35  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008609  Ppro_2872  short-chain dehydrogenase/reductase SDR  35.16 
 
 
222 aa  140  9.999999999999999e-33  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_0449  short-chain dehydrogenase/reductase SDR  33.33 
 
 
257 aa  135  7.000000000000001e-31  Natrialba magadii ATCC 43099  Archaea  normal  0.237578  n/a   
 
 
-
 
NC_010644  Emin_0309  short-chain dehydrogenase/reductase SDR  32.92 
 
 
249 aa  135  9e-31  Elusimicrobium minutum Pei191  Bacteria  hitchhiker  0.000668025  hitchhiker  0.00000185563 
 
 
-
 
NC_007908  Rfer_3312  short-chain dehydrogenase/reductase SDR  29.58 
 
 
260 aa  98.2  1e-19  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1221  short chain dehydrogenase/reductase family oxidoreductase  26.87 
 
 
241 aa  95.1  9e-19  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.810471 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  29.22 
 
 
261 aa  81.3  0.00000000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1330  short-chain dehydrogenase/reductase SDR  34.07 
 
 
247 aa  80.1  0.00000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.425796  n/a   
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  27.89 
 
 
263 aa  80.1  0.00000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_008148  Rxyl_2452  short chain dehydrogenase  30.96 
 
 
250 aa  79.7  0.00000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_13470  short chain dehydrogenase  28.57 
 
 
251 aa  77.4  0.0000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2218  short chain dehydrogenase  26.34 
 
 
249 aa  77.4  0.0000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3342  short-chain dehydrogenase/reductase SDR  31.89 
 
 
245 aa  77.4  0.0000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.468783  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3967  short-chain dehydrogenase/reductase SDR  27.07 
 
 
264 aa  76.3  0.0000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0321162  n/a   
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  27.6 
 
 
249 aa  75.9  0.0000000000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_009338  Mflv_1853  short chain dehydrogenase  29.15 
 
 
249 aa  75.5  0.0000000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.787999  normal 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  29.22 
 
 
262 aa  74.3  0.000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1550  short-chain dehydrogenase/reductase SDR  24.39 
 
 
248 aa  73.9  0.000000000002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0459  short-chain dehydrogenase/reductase SDR  29.51 
 
 
260 aa  73.9  0.000000000002  Pseudomonas putida GB-1  Bacteria  normal  normal  0.240703 
 
 
-
 
NC_002947  PP_0429  short chain dehydrogenase/reductase family oxidoreductase  29.51 
 
 
260 aa  73.6  0.000000000003  Pseudomonas putida KT2440  Bacteria  normal  normal  0.406504 
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  26.69 
 
 
264 aa  73.6  0.000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  25.94 
 
 
264 aa  73.6  0.000000000003  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  28.05 
 
 
262 aa  73.6  0.000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_007951  Bxe_A3786  short chain dehydrogenase  24.79 
 
 
246 aa  73.6  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.468877 
 
 
-
 
NC_009512  Pput_0462  short-chain dehydrogenase/reductase SDR  29.51 
 
 
260 aa  73.2  0.000000000003  Pseudomonas putida F1  Bacteria  normal  0.767614  hitchhiker  0.00534124 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  28.17 
 
 
258 aa  73.2  0.000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_1201  short chain dehydrogenase  26.64 
 
 
289 aa  73.2  0.000000000004  Psychrobacter arcticus 273-4  Bacteria  normal  0.0718298  normal  0.0224844 
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  25.94 
 
 
264 aa  72.8  0.000000000005  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  25.94 
 
 
264 aa  72.8  0.000000000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  25.94 
 
 
264 aa  72.8  0.000000000005  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  26.32 
 
 
264 aa  72.8  0.000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0469  short chain dehydrogenase  30.73 
 
 
292 aa  72.4  0.000000000007  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  27.24 
 
 
266 aa  72  0.000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  25.94 
 
 
264 aa  71.6  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  25.94 
 
 
264 aa  71.2  0.00000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_2831  short-chain dehydrogenase/reductase SDR  25.38 
 
 
264 aa  70.9  0.00000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3511  short-chain dehydrogenase/reductase SDR  28.91 
 
 
264 aa  71.2  0.00000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.531457  n/a   
 
 
-
 
NC_010681  Bphyt_0896  short chain dehydrogenase  25.62 
 
 
246 aa  70.9  0.00000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_12310  short-chain dehydrogenase of unknown substrate specificity  29.19 
 
 
270 aa  70.5  0.00000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.3676  normal  0.223065 
 
 
-
 
NC_008228  Patl_0632  short chain dehydrogenase  24.18 
 
 
249 aa  70.9  0.00000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6402  short-chain dehydrogenase/reductase SDR  25.81 
 
 
277 aa  70.5  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000182624  normal 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  24.71 
 
 
266 aa  70.9  0.00000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_002977  MCA2567  short chain dehydrogenase  26.94 
 
 
245 aa  70.1  0.00000000003  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  26.44 
 
 
255 aa  70.1  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_011126  HY04AAS1_0976  short-chain dehydrogenase/reductase SDR  26.81 
 
 
244 aa  70.5  0.00000000003  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4715  short chain dehydrogenase  30.15 
 
 
249 aa  69.7  0.00000000004  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4421  short chain dehydrogenase  30.15 
 
 
249 aa  70.1  0.00000000004  Mycobacterium sp. KMS  Bacteria  normal  normal  0.794825 
 
 
-
 
NC_013889  TK90_1010  short-chain dehydrogenase/reductase SDR  26.77 
 
 
254 aa  69.7  0.00000000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.904003  normal  0.571542 
 
 
-
 
NC_009656  PSPA7_6249  short chain dehydrogenase  27.5 
 
 
245 aa  70.1  0.00000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4335  short chain dehydrogenase  30.15 
 
 
249 aa  70.1  0.00000000004  Mycobacterium sp. MCS  Bacteria  normal  0.0693718  n/a   
 
 
-
 
NC_008740  Maqu_0117  short chain dehydrogenase  25.83 
 
 
250 aa  69.3  0.00000000005  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0320  short-chain dehydrogenase/reductase SDR  26.78 
 
 
240 aa  69.7  0.00000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  25.56 
 
 
264 aa  69.3  0.00000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  26.07 
 
 
243 aa  69.3  0.00000000006  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10962  short chain dehydrogenase  28.14 
 
 
253 aa  69.3  0.00000000006  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.247015 
 
 
-
 
NC_008726  Mvan_4881  short chain dehydrogenase  27.13 
 
 
249 aa  69.3  0.00000000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.968651 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  26.8 
 
 
258 aa  68.9  0.00000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0130  short chain dehydrogenase  26.74 
 
 
265 aa  68.2  0.0000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.727225  n/a   
 
 
-
 
NC_011071  Smal_0498  short chain dehydrogenase  28.69 
 
 
243 aa  68.2  0.0000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.795397 
 
 
-
 
NC_010676  Bphyt_4878  short-chain dehydrogenase/reductase SDR  24.5 
 
 
302 aa  68.2  0.0000000001  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00176242  normal  0.778008 
 
 
-
 
NC_007969  Pcryo_1188  short chain dehydrogenase  26.23 
 
 
291 aa  68.2  0.0000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  0.0152839  normal  0.145128 
 
 
-
 
NC_013730  Slin_1686  short-chain dehydrogenase/reductase SDR  24.52 
 
 
269 aa  68.2  0.0000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.292744  normal 
 
 
-
 
NC_007005  Psyr_2301  short chain dehydrogenase  26.34 
 
 
246 aa  67.4  0.0000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00458311  hitchhiker  0.00750193 
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  26.47 
 
 
259 aa  67.8  0.0000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_010002  Daci_6048  short chain dehydrogenase  26.21 
 
 
266 aa  67.8  0.0000000002  Delftia acidovorans SPH-1  Bacteria  normal  0.549002  normal 
 
 
-
 
NC_008554  Sfum_0143  short chain dehydrogenase  24.79 
 
 
243 aa  67.8  0.0000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.896795 
 
 
-
 
NC_010622  Bphy_0185  short chain dehydrogenase  27.5 
 
 
256 aa  67  0.0000000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1219  short chain dehydrogenase  25.63 
 
 
243 aa  67  0.0000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  25.2 
 
 
273 aa  66.6  0.0000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1790  short chain dehydrogenase  24.16 
 
 
307 aa  67  0.0000000003  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00000125648 
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  25.74 
 
 
277 aa  67  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_013132  Cpin_1337  3-ketoacyl-(acyl-carrier-protein) reductase  27.59 
 
 
238 aa  66.6  0.0000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.541378  normal 
 
 
-
 
NC_008726  Mvan_4623  short-chain dehydrogenase/reductase SDR  27.16 
 
 
265 aa  66.2  0.0000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_1215  3-oxoacyl-[acyl-carrier-protein] reductase  26.06 
 
 
245 aa  66.6  0.0000000004  Maricaulis maris MCS10  Bacteria  normal  normal  0.765065 
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  26.58 
 
 
258 aa  65.9  0.0000000007  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0885  short chain dehydrogenase  24.27 
 
 
250 aa  65.9  0.0000000007  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0379  short-chain dehydrogenase/reductase SDR  24.6 
 
 
262 aa  65.5  0.0000000008  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2101  short-chain dehydrogenase/reductase SDR  26.06 
 
 
253 aa  65.5  0.0000000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.044107  n/a   
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  25.52 
 
 
277 aa  65.1  0.000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  25.4 
 
 
258 aa  63.9  0.000000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  26.25 
 
 
255 aa  63.9  0.000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2951  short chain dehydrogenase  24.8 
 
 
276 aa  63.9  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>