Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0885 |
Symbol | |
ID | 5661284 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1082858 |
End bp | 1083610 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641235430 |
Product | short chain dehydrogenase |
Protein accession | YP_001500747 |
Protein GI | 157960713 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAACC GTCAAAGGAT ATTAATCACT GGCGCAAGTT CAGGCCTAGG TAAAGGCATG GCCATCGAGT TTGCCAAGAA GGGGCGAGAC CTAGCGCTAT GTGCACGGCG AGTCGAACGT TTAGAAGTTC TCAAGCAAGA GTTACTGCAG TTAAATCCCA ATATTAAGGT TTCGGTCAAA GCACTCGATG TGAATCAGCA TCAAGCTGTT TTTGCGGTGT TTAATGAGTT TAAGTCTGAG TTTGGACAGC TAGATAGAAT TATTCTCAAT GCGGGAATGG GGAAGGGCGC ATCTATTGGC ACTGGACATT TTGAGGCTAA CAAGCAAACT GCTGAAACCA ATTTTGTCGC TCTATTGGCA CAAGCTGAAG CGGCAATGGC CATTTTTCGT GAACAGAATT CTGGTCACTT AGTCACAATA TCTTCAGTGA GTGCGGTGAG GGGCTTTAGA CGAGCGATGA CGGTTTATGC GGCCTCGAAG GCGGCGGTAA CCTCGTTAAC GGAAGGCATT CGTATCGATG TGATGCATAC GCCGATTAAG GTCAGTTGTA TTCATCCTGG GTTTATTCGT AGTGAAATTA ATGAGCATGT GGCAAAGGTT CCCTTTATCG TCGATACGCA AACGGGTTGT AGGGCCATGA TAGCCGCTAT AGAAGCCGAA AGGGCAAGCA GTTTCGTGCC ACGTTGGCCT TGGTCACTAT TGCGCTGGTT AATACCGCTT GTGCCGAACC GCTGGATAAG ACGAATGAGT TGA
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Protein sequence | MTNRQRILIT GASSGLGKGM AIEFAKKGRD LALCARRVER LEVLKQELLQ LNPNIKVSVK ALDVNQHQAV FAVFNEFKSE FGQLDRIILN AGMGKGASIG TGHFEANKQT AETNFVALLA QAEAAMAIFR EQNSGHLVTI SSVSAVRGFR RAMTVYAASK AAVTSLTEGI RIDVMHTPIK VSCIHPGFIR SEINEHVAKV PFIVDTQTGC RAMIAAIEAE RASSFVPRWP WSLLRWLIPL VPNRWIRRMS
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