| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1335 |
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| Symbol | |
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| ID | 4278009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1588578 |
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| End bp | 1589321 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134110 |
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| Product | short chain dehydrogenase family protein |
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| Protein accession | YP_750026 |
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| Protein GI | 114562513 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00551908 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTACAG CGACAGCGAT GATTATTGGT GCCAGCTCGC AACTGAGCCA AGCATTAGCC
AGACAGTTAT CTGCACAGCA AGTTTCGCTA GTGCTTTTTG TTAACGACCC TGAATCACTT
AACGAGTTTA GTCAAAGTCT GCCAGGTGAA GTGAGTGTTT ATCCGTTAGC GATTGATCAA
CCTGATACGC TAATTACACA GCTTAATACT GCTTGGACCA AACATAATGG CGCCCATTTG
GTGATTGTTA ATACTGGTGT CAATGACTAC GACCCTTCTC TGCCTTGGGC AATTGATAAG
CTCGCCATCG AAATTAACGT TATGGGATTT GCTGCTGCCA ATAACTGTAT TTTTAAATTA
ATGTGCGATC AAGGTTATGG CCAACTAGCC GCCATTAACT CAATAGCCGG TCAACGTGGA
GGCCCTAATG TGGCTTATCA TGCCTCCAAA GCCTTTGCTG AAAATTACCT GCAAGGCTTG
AGTATGCATG CGCAACGATT GAAGCTGCCT ATTACCATTA GTGATATTCA ATTAGGGTTA
TTTGATAAAG CCGTTCATTT GAATACACAA CTGCTCCTGT CGCCTATCGA TAAAGTGGCT
AAACAAATCA TCACGGCATT ACAAAAAGGC AAACGGCGAG TTTATGTCAC TAAACGCTGG
CGTGTTGTCG CTTGGATAAA TCGTTTATTA CCAGAGTACA TTTACAATAC CCGCCATTGG
AAACCGCGTA AAAAGTCTCA ATAA
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| Protein sequence | MSTATAMIIG ASSQLSQALA RQLSAQQVSL VLFVNDPESL NEFSQSLPGE VSVYPLAIDQ
PDTLITQLNT AWTKHNGAHL VIVNTGVNDY DPSLPWAIDK LAIEINVMGF AAANNCIFKL
MCDQGYGQLA AINSIAGQRG GPNVAYHASK AFAENYLQGL SMHAQRLKLP ITISDIQLGL
FDKAVHLNTQ LLLSPIDKVA KQIITALQKG KRRVYVTKRW RVVAWINRLL PEYIYNTRHW
KPRKKSQ
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