| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1470 |
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| Symbol | |
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| ID | 5610761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1744071 |
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| End bp | 1744838 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932336 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001473209 |
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| Protein GI | 157374609 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00108636 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000219096 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACACAAG CAACCGCCAT AATTGTAGGT GCTAGCTCAC TCCTGAGCCG AGAAATCGCA
AAACAACTCG CCGATCAAGG TGTCGAACTT GCGTTACTAG CGCAAGATCC TGATTCACTT
CAAGAGTTTG CAGACAGTCT TCCAACCCAA GTTCATCTGT TTCCATTACA AATTGTAGAG
ACTCAAGCCA TTATCTCAAC TCTTGAAGAG GTGTGGCAAC AATTAGGCGG GGCTCACCTC
GTCTTAGTTA ATACCGGTCT GAACAGCTAT GATCCACAGC TTCCCTGGGG ACCTGAGCAA
GATATCATCA CAGTTAATGT GCAAGGATTT GCGGCCGTCT GCAATACTGC TTTTCGCTTA
TTCAGAGAGC AAGGTTACGG CCAACTTGCC GCTGTAAACT CGATTGCCGG CCTGCGTGGT
GGTCCAAGTG TGGCTTATCA TGCGTCAAAA GCCTTTGCGA CTAATTATCT GGAAGGTTTG
AGCATGCATG CTCAGCGGTT AAAGTTACCT ATCACAATCA CTGATATTCA GCTGGGCCTG
CTCGACAAAG CCGCAATGCA GCAAAGCCGT TTATGGCTCT CTCCGCCGGA TGAAGTTGCA
AGGCAGATAA TTAAGGCTAT GCAGGGAGCG AAACGAAAAG TCTATGTGAC TAAACGGTGG
CGTTTAGTCG CCTGGCTGAC TAAGTTATTG CCCGAGTTTG TCTACAACAC CCGACACTGG
CGTACAAAGG CCGAACGCCT CGCGGCCAAA GCCGAAGGGA AAAAATAG
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| Protein sequence | MTQATAIIVG ASSLLSREIA KQLADQGVEL ALLAQDPDSL QEFADSLPTQ VHLFPLQIVE
TQAIISTLEE VWQQLGGAHL VLVNTGLNSY DPQLPWGPEQ DIITVNVQGF AAVCNTAFRL
FREQGYGQLA AVNSIAGLRG GPSVAYHASK AFATNYLEGL SMHAQRLKLP ITITDIQLGL
LDKAAMQQSR LWLSPPDEVA RQIIKAMQGA KRKVYVTKRW RLVAWLTKLL PEFVYNTRHW
RTKAERLAAK AEGKK
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