Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2301 |
Symbol | |
ID | 3367816 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 2674409 |
End bp | 2675149 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637652651 |
Product | short chain dehydrogenase |
Protein accession | YP_235382 |
Protein GI | 66045541 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00458311 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00750193 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAAA TTCTGATCAT TGGCGCTACA TCAACCATTG CCCATGCCTG CGCCCGACGC TGGGCCACGC AAGGCTGTGA TTTTTTCCTG GTGGCGCGCA ATACGGACAA GCTCGTGAGC AATGCCGCCG ACCTCAGGGC TCGCGGTGCC GGACACGTAG ACACCTATCA AATGGACGTC ACGCACTTCT CGGAGCACCC GGCGATGCTG GCTGATTGTC TGGCTGTACT GCAGCAGATC GATGTCGTGC TTCTGGCTCA CGGCACCTTG CCCGATCAGA AGGCCTGCGA GCAGAACGCA GGGCTGGCCG TGCAGGAATT CATCACCAAT GGCGCATCGG TGATTGCCTT GCTGACCGTG TTGGCCAGGC AGTTCGAGGT TCAGCGTTGC GGCACACTGG CGGTGATTTC CTCGGTCGCG GGCGATCGCG GACGCCCTTC CAATTATCTG TACGGCTCGG CCAAGGCTGC CGTCTCGACG TTCTGCGACG GGTTACAGGC GCGGATGTTC AAGCTGGGCG TACACGTAGT GACCATAAAA CCAGGCTTTG TCGACACGCC CATGACCCGG GGTCTGCCAC TGCCGGCCTG GCTGGTGGCG CAACCGGAAG ACGTTGCTGA ACGCATCGTC AATGGCATCG CACGCCAATC AACAAGCCTT TACGCGCCGG GCTTCTGGGC ATGGATCATG TGGGTGATTC GCTCGATCCC GCAGCCGTTG TTCAAAAGGC TCAACCTGTG A
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Protein sequence | MKKILIIGAT STIAHACARR WATQGCDFFL VARNTDKLVS NAADLRARGA GHVDTYQMDV THFSEHPAML ADCLAVLQQI DVVLLAHGTL PDQKACEQNA GLAVQEFITN GASVIALLTV LARQFEVQRC GTLAVISSVA GDRGRPSNYL YGSAKAAVST FCDGLQARMF KLGVHVVTIK PGFVDTPMTR GLPLPAWLVA QPEDVAERIV NGIARQSTSL YAPGFWAWIM WVIRSIPQPL FKRLNL
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