More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_4878 on replicon NC_010676
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010676  Bphyt_4878  short-chain dehydrogenase/reductase SDR  100 
 
 
302 aa  619  1e-176  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00176242  normal  0.778008 
 
 
-
 
NC_007952  Bxe_B1790  short chain dehydrogenase  96.36 
 
 
307 aa  571  1.0000000000000001e-162  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00000125648 
 
 
-
 
NC_009075  BURPS668_A1346  short chain dehydrogenase/reductase family oxidoreductase  79 
 
 
308 aa  472  1e-132  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1269  short chain dehydrogenase/reductase family oxidoreductase  79 
 
 
308 aa  472  1e-132  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2524  short chain dehydrogenase  79 
 
 
308 aa  472  1e-132  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0559  short-chain dehydrogenase/reductase SDR  79 
 
 
308 aa  472  1e-132  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0827865  n/a   
 
 
-
 
NC_009079  BMA10247_A1008  short chain dehydrogenase  79 
 
 
308 aa  472  1e-132  Burkholderia mallei NCTC 10247  Bacteria  normal  0.388516  n/a   
 
 
-
 
NC_007650  BTH_II1472  short chain dehydrogenase  79.36 
 
 
315 aa  470  1.0000000000000001e-131  Burkholderia thailandensis E264  Bacteria  normal  0.730562  n/a   
 
 
-
 
NC_010086  Bmul_4018  short-chain dehydrogenase/reductase SDR  76.79 
 
 
312 aa  465  9.999999999999999e-131  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.169146  normal  0.55969 
 
 
-
 
NC_007511  Bcep18194_B1144  Short-chain dehydrogenase/reductase SDR  73.9 
 
 
307 aa  463  1e-129  Burkholderia sp. 383  Bacteria  normal  0.151567  normal  0.117156 
 
 
-
 
NC_010515  Bcenmc03_5625  short-chain dehydrogenase/reductase SDR  76.26 
 
 
309 aa  459  9.999999999999999e-129  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.285502  normal 
 
 
-
 
NC_008543  Bcen2424_4675  short-chain dehydrogenase/reductase SDR  76.26 
 
 
309 aa  459  9.999999999999999e-129  Burkholderia cenocepacia HI2424  Bacteria  normal  0.396312  normal  0.215379 
 
 
-
 
NC_010552  BamMC406_4527  short-chain dehydrogenase/reductase SDR  75.54 
 
 
311 aa  457  1e-127  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.207166 
 
 
-
 
NC_008061  Bcen_3693  short-chain dehydrogenase/reductase SDR  75.9 
 
 
309 aa  457  1e-127  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4069  short-chain dehydrogenase/reductase SDR  73.38 
 
 
312 aa  452  1.0000000000000001e-126  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.596903 
 
 
-
 
NC_012856  Rpic12D_3013  short-chain dehydrogenase/reductase SDR  69.69 
 
 
296 aa  421  1e-117  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3360  short-chain dehydrogenase/reductase SDR  69.34 
 
 
296 aa  419  1e-116  Ralstonia pickettii 12J  Bacteria  normal  0.0880635  normal 
 
 
-
 
NC_007973  Rmet_3599  short-chain dehydrogenase/reductase SDR  67.02 
 
 
296 aa  399  9.999999999999999e-111  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2621  short-chain dehydrogenase/reductase SDR  55.52 
 
 
295 aa  333  2e-90  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.786359 
 
 
-
 
NC_008463  PA14_44570  putative short-chain dehydrogenase  55.52 
 
 
295 aa  332  7.000000000000001e-90  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.30545 
 
 
-
 
NC_009656  PSPA7_3796  putative short-chain dehydrogenase  54.86 
 
 
295 aa  326  3e-88  Pseudomonas aeruginosa PA7  Bacteria  normal  0.205058  n/a   
 
 
-
 
NC_010515  Bcenmc03_3856  short-chain dehydrogenase/reductase SDR  58.6 
 
 
300 aa  313  1.9999999999999998e-84  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.514987 
 
 
-
 
NC_008061  Bcen_4697  short-chain dehydrogenase/reductase SDR  58.25 
 
 
300 aa  311  7.999999999999999e-84  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.858083  n/a   
 
 
-
 
NC_008543  Bcen2424_3665  short-chain dehydrogenase/reductase SDR  58.25 
 
 
300 aa  311  7.999999999999999e-84  Burkholderia cenocepacia HI2424  Bacteria  normal  0.196954  normal 
 
 
-
 
NC_006349  BMAA0101  short chain dehydrogenase/reductase family oxidoreductase  55.75 
 
 
302 aa  310  2.9999999999999997e-83  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1262  short chain dehydrogenase/reductase family oxidoreductase  55.75 
 
 
302 aa  310  2.9999999999999997e-83  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1539  short chain dehydrogenase/reductase family oxidoreductase  55.75 
 
 
302 aa  309  2.9999999999999997e-83  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0120  short chain dehydrogenase/reductase family oxidoreductase  55.75 
 
 
302 aa  309  2.9999999999999997e-83  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5043  short-chain dehydrogenase/reductase SDR  59.35 
 
 
300 aa  309  2.9999999999999997e-83  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.680577 
 
 
-
 
NC_007511  Bcep18194_B2443  Short-chain dehydrogenase/reductase SDR  57.89 
 
 
300 aa  308  5.9999999999999995e-83  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A2673  short chain dehydrogenase/reductase family oxidoreductase  55.75 
 
 
302 aa  307  1.0000000000000001e-82  Burkholderia pseudomallei 1106a  Bacteria  normal  0.181377  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1074  short chain dehydrogenase/reductase family oxidoreductase  55.75 
 
 
302 aa  307  1.0000000000000001e-82  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2820  dehydrogenases with different specificities  55.75 
 
 
302 aa  307  1.0000000000000001e-82  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3569  short-chain dehydrogenase/reductase SDR  58.25 
 
 
308 aa  307  2.0000000000000002e-82  Burkholderia ambifaria MC40-6  Bacteria  normal  0.683076  hitchhiker  0.00146118 
 
 
-
 
NC_008391  Bamb_5413  short-chain dehydrogenase/reductase SDR  58.25 
 
 
308 aa  307  2.0000000000000002e-82  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0404  short chain dehydrogenase/reductase family oxidoreductase  55.4 
 
 
302 aa  303  3.0000000000000004e-81  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0304  short-chain dehydrogenase/reductase SDR  47.47 
 
 
309 aa  276  3e-73  Psychrobacter sp. PRwf-1  Bacteria  normal  0.074209  normal  0.817715 
 
 
-
 
NC_008740  Maqu_0158  short-chain dehydrogenase/reductase SDR  49.29 
 
 
271 aa  268  5.9999999999999995e-71  Marinobacter aquaeolei VT8  Bacteria  normal  0.722445  n/a   
 
 
-
 
NC_009439  Pmen_1266  short-chain dehydrogenase/reductase SDR  47.29 
 
 
278 aa  258  1e-67  Pseudomonas mendocina ymp  Bacteria  normal  0.343225  normal 
 
 
-
 
NC_008726  Mvan_4479  short-chain dehydrogenase/reductase SDR  45.58 
 
 
276 aa  252  5.000000000000001e-66  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0643496  normal  0.318534 
 
 
-
 
NC_013441  Gbro_1880  short-chain dehydrogenase/reductase SDR  45.99 
 
 
276 aa  250  2e-65  Gordonia bronchialis DSM 43247  Bacteria  normal  0.138576  n/a   
 
 
-
 
NC_014158  Tpau_2257  short-chain dehydrogenase/reductase SDR  48.2 
 
 
275 aa  249  5e-65  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.116431  n/a   
 
 
-
 
NC_009338  Mflv_2216  short-chain dehydrogenase/reductase SDR  46.91 
 
 
276 aa  246  4e-64  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.742045 
 
 
-
 
NC_008146  Mmcs_3975  short-chain dehydrogenase/reductase SDR  47 
 
 
276 aa  245  8e-64  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4049  short-chain dehydrogenase/reductase SDR  47 
 
 
276 aa  245  8e-64  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3989  short-chain dehydrogenase/reductase SDR  47 
 
 
276 aa  245  8e-64  Mycobacterium sp. JLS  Bacteria  normal  0.171067  normal  0.181158 
 
 
-
 
NC_014158  Tpau_1209  short-chain dehydrogenase/reductase SDR  46.5 
 
 
275 aa  243  3e-63  Tsukamurella paurometabola DSM 20162  Bacteria  hitchhiker  0.00962961  n/a   
 
 
-
 
NC_008699  Noca_3699  short-chain dehydrogenase/reductase SDR  46.01 
 
 
280 aa  243  3.9999999999999997e-63  Nocardioides sp. JS614  Bacteria  normal  0.0817481  n/a   
 
 
-
 
NC_009565  TBFG_13102  short-chain type dehydrogenase/reductase  44.84 
 
 
276 aa  239  2.9999999999999997e-62  Mycobacterium tuberculosis F11  Bacteria  normal  0.432292  normal 
 
 
-
 
NC_009719  Plav_0391  short-chain dehydrogenase/reductase SDR  44.12 
 
 
279 aa  235  7e-61  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.319463  normal 
 
 
-
 
NC_007348  Reut_B5157  Short-chain dehydrogenase/reductase SDR  45.99 
 
 
271 aa  233  3e-60  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11271  short-chain type dehydrogenase/reductase  43.31 
 
 
276 aa  231  1e-59  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000317139  hitchhiker  0.0033897 
 
 
-
 
NC_009485  BBta_6766  putative short-chain dehydrogenase  42.76 
 
 
279 aa  228  9e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal 
 
 
-
 
NC_007974  Rmet_5847  short-chain dehydrogenase/reductase SDR  45.19 
 
 
281 aa  223  3e-57  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2356  short-chain dehydrogenase/reductase SDR  42.81 
 
 
282 aa  212  4.9999999999999996e-54  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0998128  n/a   
 
 
-
 
NC_009484  Acry_1087  short-chain dehydrogenase/reductase SDR  43.16 
 
 
286 aa  209  3e-53  Acidiphilium cryptum JF-5  Bacteria  normal  0.252629  n/a   
 
 
-
 
NC_009767  Rcas_3066  short-chain dehydrogenase/reductase SDR  42.34 
 
 
273 aa  200  1.9999999999999998e-50  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.172953  normal 
 
 
-
 
NC_013131  Caci_5627  short-chain dehydrogenase/reductase SDR  42.41 
 
 
282 aa  200  1.9999999999999998e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.193827 
 
 
-
 
NC_013739  Cwoe_5665  short-chain dehydrogenase/reductase SDR  44.61 
 
 
275 aa  194  1e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2396  short-chain dehydrogenase/reductase SDR  42.7 
 
 
321 aa  180  2e-44  Salinispora tropica CNB-440  Bacteria  normal  0.13478  normal 
 
 
-
 
NC_011757  Mchl_4548  short-chain dehydrogenase/reductase SDR  41.11 
 
 
274 aa  175  9e-43  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.239905  normal  0.858139 
 
 
-
 
NC_010725  Mpop_4692  short-chain dehydrogenase/reductase SDR  41.48 
 
 
274 aa  174  1.9999999999999998e-42  Methylobacterium populi BJ001  Bacteria  normal  0.169711  normal  0.0760952 
 
 
-
 
NC_010172  Mext_4179  short-chain dehydrogenase/reductase SDR  40.74 
 
 
274 aa  173  2.9999999999999996e-42  Methylobacterium extorquens PA1  Bacteria  normal  0.719073  normal 
 
 
-
 
NC_011894  Mnod_2884  short-chain dehydrogenase/reductase SDR  38.38 
 
 
273 aa  173  3.9999999999999995e-42  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2412  short-chain dehydrogenase/reductase SDR  40.86 
 
 
269 aa  167  2.9999999999999998e-40  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00185291  normal 
 
 
-
 
NC_011004  Rpal_3087  short-chain dehydrogenase/reductase SDR  39.03 
 
 
322 aa  165  9e-40  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2691  short-chain dehydrogenase/reductase SDR  39.03 
 
 
322 aa  162  6e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.16655  normal 
 
 
-
 
NC_009953  Sare_2544  short-chain dehydrogenase/reductase SDR  41.7 
 
 
313 aa  159  6e-38  Salinispora arenicola CNS-205  Bacteria  normal  0.638785  decreased coverage  0.00000422955 
 
 
-
 
NC_008347  Mmar10_1139  short-chain dehydrogenase/reductase SDR  39.33 
 
 
277 aa  158  1e-37  Maricaulis maris MCS10  Bacteria  normal  0.248176  normal  0.05597 
 
 
-
 
NC_009943  Dole_2754  short-chain dehydrogenase/reductase SDR  35.14 
 
 
275 aa  153  2.9999999999999998e-36  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.433019  n/a   
 
 
-
 
NC_010505  Mrad2831_5451  short-chain dehydrogenase/reductase SDR  37.77 
 
 
281 aa  153  2.9999999999999998e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.255746 
 
 
-
 
NC_013946  Mrub_0175  short-chain dehydrogenase/reductase SDR  35.47 
 
 
267 aa  150  2e-35  Meiothermus ruber DSM 1279  Bacteria  normal  0.319176  normal 
 
 
-
 
NC_013174  Jden_0145  short-chain dehydrogenase/reductase SDR  36.19 
 
 
267 aa  146  3e-34  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_4287  short-chain dehydrogenase/reductase SDR  38.33 
 
 
276 aa  146  4.0000000000000006e-34  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0836216  n/a   
 
 
-
 
NC_011831  Cagg_3168  short-chain dehydrogenase/reductase SDR  36.47 
 
 
269 aa  144  2e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.685444  normal 
 
 
-
 
NC_007778  RPB_2657  Short-chain dehydrogenase/reductase SDR  38.71 
 
 
322 aa  142  5e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0750048 
 
 
-
 
NC_010511  M446_3686  short-chain dehydrogenase/reductase SDR  36.67 
 
 
273 aa  142  8e-33  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00031135 
 
 
-
 
NC_009485  BBta_4618  putative short-chain dehydrogenase  35.27 
 
 
305 aa  140  1.9999999999999998e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.100713 
 
 
-
 
NC_009565  TBFG_13074  short chain dehydrogenase  35.11 
 
 
287 aa  134  1.9999999999999998e-30  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.486367 
 
 
-
 
NC_009077  Mjls_1791  short chain dehydrogenase  33.95 
 
 
285 aa  133  3e-30  Mycobacterium sp. JLS  Bacteria  normal  0.0146977  normal 
 
 
-
 
NC_008146  Mmcs_1810  short chain dehydrogenase  33.58 
 
 
285 aa  132  7.999999999999999e-30  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1857  short chain dehydrogenase  33.58 
 
 
285 aa  132  7.999999999999999e-30  Mycobacterium sp. KMS  Bacteria  normal  normal  0.160159 
 
 
-
 
NC_009484  Acry_2115  hypothetical protein  39.13 
 
 
292 aa  131  1.0000000000000001e-29  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4313  short chain dehydrogenase  33.21 
 
 
290 aa  131  1.0000000000000001e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0115  short-chain dehydrogenase/reductase SDR  33.21 
 
 
278 aa  131  2.0000000000000002e-29  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5364  short-chain dehydrogenase/reductase SDR  39.11 
 
 
267 aa  130  2.0000000000000002e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.676071  normal 
 
 
-
 
NC_013131  Caci_8731  short chain dehydrogenase  32.23 
 
 
590 aa  131  2.0000000000000002e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.199229  normal  0.347677 
 
 
-
 
NC_010002  Daci_3363  hypothetical protein  37.26 
 
 
301 aa  129  6e-29  Delftia acidovorans SPH-1  Bacteria  normal  0.276324  normal 
 
 
-
 
NC_009668  Oant_2951  short chain dehydrogenase  35.69 
 
 
276 aa  128  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2823  short chain dehydrogenase  29.79 
 
 
292 aa  127  2.0000000000000002e-28  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00207351  n/a   
 
 
-
 
NC_008726  Mvan_2034  short chain dehydrogenase  32.42 
 
 
290 aa  125  7e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.959562 
 
 
-
 
NC_014158  Tpau_2974  short-chain dehydrogenase/reductase SDR  30.72 
 
 
309 aa  125  1e-27  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2833  hypothetical protein  36.92 
 
 
309 aa  124  2e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.643398 
 
 
-
 
NC_008825  Mpe_A1784  hypothetical protein  33.33 
 
 
305 aa  124  2e-27  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.59437 
 
 
-
 
NC_013037  Dfer_2713  short-chain dehydrogenase/reductase SDR  33.92 
 
 
266 aa  123  3e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1244  short chain dehydrogenase  36.44 
 
 
270 aa  123  3e-27  Pseudomonas mendocina ymp  Bacteria  normal  0.542872  normal  0.404553 
 
 
-
 
NC_008740  Maqu_2203  short chain dehydrogenase  33.1 
 
 
273 aa  123  4e-27  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.000419362  n/a   
 
 
-
 
NC_013061  Phep_3027  short-chain dehydrogenase/reductase SDR  30.32 
 
 
272 aa  123  4e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.00333155 
 
 
-
 
NC_009719  Plav_2714  short-chain dehydrogenase/reductase SDR  39.13 
 
 
294 aa  123  5e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.199953  normal 
 
 
-
 
NC_010718  Nther_2430  short-chain dehydrogenase/reductase SDR  37.13 
 
 
285 aa  122  6e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
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