Gene Svir_13470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_13470 
Symbol 
ID8386683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1390730 
End bp1391485 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content66% 
IMG OID644975431 
Productshort chain dehydrogenase 
Protein accessionYP_003133221 
Protein GI257055389 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGTAC GGAAGAACAT CGTGATCACC GGCGCCAGCT CGGGCCTGGG TGAGGGGATG 
GCGCGGAAAT TCGCCGCGCA GGGACGCAAC CTGGCGTTGT GCGCACGTCG ACGTGATCGG
CTCGATGCGC TTGCGACCGA ACTCACCGAA CGGCATCCGG GCATCCGCGT CGTGGTGCGG
CAGCTCGACG TCAACGACCA TGACCGGGTG TTCACGGTGT TCGAGGAATT CCGTGCGGAG
CTCGGCACGC TCGACCGCGT GATCGTCAAC GCGGGCATCG GCAAGGGACA GCCGATCGGC
AAGGGCTCCT TCCACGCGAA CAAACAGACG GTGGAGACCA ATCTCGTCGC CGGGTTGGCC
CAGTGCGAGG CCGCGGTGTC GATCTTCAGG GAACAGAACG CGGGGCACCT CGTGGTCGTC
TCGTCGTTCA GCGCGTTGCG CGGAATGCCT CGCAACATGA CCGCCTACGC CGCCTCCAAG
GCGGGGATCT CCGCACTCGC CGACGGTATC CGCGTGGACC TGCTGCACAC TCCGATCCGG
GTCACGACCG TGCTTCCCGG CTACATCGAA TCGGAGATGA CCCACCGTAG CTCCGGACGG
ACACCGTTGA TCGCCGACGC GGAAACCGGT GTGCGAGCGT TGGTGAACGC GATCGAGAAG
GAGCCGGTCC GAGCCTACGT GCCGTCCTGG CCATGGGTGC CGTTGAGCGT GCTGGTACGC
GCAGTGCCGG CTCGCCTGTT GCGGCGGTTC GTCTGA
 
Protein sequence
MAVRKNIVIT GASSGLGEGM ARKFAAQGRN LALCARRRDR LDALATELTE RHPGIRVVVR 
QLDVNDHDRV FTVFEEFRAE LGTLDRVIVN AGIGKGQPIG KGSFHANKQT VETNLVAGLA
QCEAAVSIFR EQNAGHLVVV SSFSALRGMP RNMTAYAASK AGISALADGI RVDLLHTPIR
VTTVLPGYIE SEMTHRSSGR TPLIADAETG VRALVNAIEK EPVRAYVPSW PWVPLSVLVR
AVPARLLRRF V