More than 300 homologs were found in PanDaTox collection
for query gene PP_0429 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0429  short chain dehydrogenase/reductase family oxidoreductase  100 
 
 
260 aa  517  1e-146  Pseudomonas putida KT2440  Bacteria  normal  normal  0.406504 
 
 
-
 
NC_009512  Pput_0462  short-chain dehydrogenase/reductase SDR  99.62 
 
 
260 aa  514  1.0000000000000001e-145  Pseudomonas putida F1  Bacteria  normal  0.767614  hitchhiker  0.00534124 
 
 
-
 
NC_010322  PputGB1_0459  short-chain dehydrogenase/reductase SDR  98.85 
 
 
260 aa  512  1e-144  Pseudomonas putida GB-1  Bacteria  normal  normal  0.240703 
 
 
-
 
NC_010501  PputW619_4774  short-chain dehydrogenase/reductase SDR  90.77 
 
 
260 aa  452  1.0000000000000001e-126  Pseudomonas putida W619  Bacteria  normal  normal  0.45506 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  71.65 
 
 
262 aa  384  1e-105  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  68.48 
 
 
258 aa  369  1e-101  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  67.32 
 
 
258 aa  365  1e-100  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  66.41 
 
 
266 aa  340  1e-92  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  64.5 
 
 
266 aa  332  3e-90  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  64.86 
 
 
262 aa  325  3e-88  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  40.96 
 
 
263 aa  181  9.000000000000001e-45  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  39.36 
 
 
264 aa  170  2e-41  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  40.39 
 
 
258 aa  169  3e-41  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  38.55 
 
 
267 aa  165  6.9999999999999995e-40  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_006368  lpp1382  hypothetical protein  34.51 
 
 
259 aa  165  9e-40  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1378  hypothetical protein  34.12 
 
 
259 aa  164  1.0000000000000001e-39  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  35.97 
 
 
257 aa  162  4.0000000000000004e-39  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  37.31 
 
 
261 aa  161  8.000000000000001e-39  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_008261  CPF_0353  short chain dehydrogenase/reductase family oxidoreductase  33.99 
 
 
265 aa  160  2e-38  Clostridium perfringens ATCC 13124  Bacteria  normal  0.45647  n/a   
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  35.18 
 
 
257 aa  160  2e-38  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  36.92 
 
 
261 aa  159  5e-38  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0344  3-oxoacyl-[acyl-carrier protein] reductase  33.99 
 
 
265 aa  158  7e-38  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  35.52 
 
 
258 aa  157  1e-37  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  40.39 
 
 
266 aa  156  3e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  37.74 
 
 
262 aa  156  3e-37  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  35.97 
 
 
256 aa  156  3e-37  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  41.04 
 
 
291 aa  150  2e-35  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  33.2 
 
 
257 aa  150  2e-35  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1836  short-chain dehydrogenase/reductase SDR  33.59 
 
 
260 aa  149  3e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_0113  short-chain dehydrogenase/reductase SDR  36.86 
 
 
259 aa  149  4e-35  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886287  normal 
 
 
-
 
NC_008392  Bamb_6118  short-chain dehydrogenase/reductase SDR  37.8 
 
 
275 aa  149  6e-35  Burkholderia ambifaria AMMD  Bacteria  normal  0.304156  normal  0.200034 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  34.68 
 
 
255 aa  148  7e-35  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1341  short-chain dehydrogenase/reductase SDR  36.47 
 
 
268 aa  148  9e-35  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  35.41 
 
 
257 aa  148  9e-35  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3643  short-chain dehydrogenase/reductase SDR  36.47 
 
 
268 aa  147  2.0000000000000003e-34  Mycobacterium sp. JLS  Bacteria  normal  0.129425  normal 
 
 
-
 
NC_007958  RPD_0689  short-chain dehydrogenase/reductase SDR  36.86 
 
 
259 aa  147  2.0000000000000003e-34  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2014  short-chain dehydrogenase/reductase SDR  38.82 
 
 
268 aa  147  2.0000000000000003e-34  Gordonia bronchialis DSM 43247  Bacteria  normal  0.700313  n/a   
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  38.49 
 
 
259 aa  147  2.0000000000000003e-34  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  35.02 
 
 
257 aa  146  3e-34  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  31.5 
 
 
262 aa  145  5e-34  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3711  short-chain dehydrogenase/reductase SDR  36.08 
 
 
268 aa  145  5e-34  Mycobacterium sp. KMS  Bacteria  normal  0.428554  normal 
 
 
-
 
NC_009338  Mflv_2545  short-chain dehydrogenase/reductase SDR  36.47 
 
 
268 aa  145  9e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.522448  normal 
 
 
-
 
NC_003295  RSc2321  dehydrogenase/reductase oxidoreductase protein  36.61 
 
 
275 aa  144  1e-33  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.195083 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  36.63 
 
 
258 aa  144  2e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  35.66 
 
 
271 aa  143  2e-33  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  33.33 
 
 
258 aa  143  3e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  35.86 
 
 
259 aa  143  3e-33  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  34.12 
 
 
257 aa  143  3e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3638  short-chain dehydrogenase/reductase SDR  35.97 
 
 
255 aa  143  3e-33  Mycobacterium sp. MCS  Bacteria  normal  0.125829  n/a   
 
 
-
 
NC_009565  TBFG_12531  short-chain type dehydrogenase/reductase  35.29 
 
 
268 aa  142  4e-33  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00342881 
 
 
-
 
NC_011004  Rpal_0423  short-chain dehydrogenase/reductase SDR  36.33 
 
 
259 aa  142  6e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.83571  n/a   
 
 
-
 
NC_013132  Cpin_3329  short-chain dehydrogenase/reductase SDR  33.46 
 
 
256 aa  142  6e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.227726  hitchhiker  0.00265893 
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  37.5 
 
 
260 aa  142  7e-33  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4098  short-chain dehydrogenase/reductase SDR  35.69 
 
 
268 aa  142  7e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.230051  normal 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  35.63 
 
 
264 aa  141  9e-33  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  39.42 
 
 
289 aa  140  1.9999999999999998e-32  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  39.27 
 
 
267 aa  140  1.9999999999999998e-32  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  37.6 
 
 
267 aa  140  3e-32  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  32.68 
 
 
269 aa  139  3.9999999999999997e-32  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  37.21 
 
 
267 aa  138  7e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  37.21 
 
 
267 aa  138  7e-32  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  39.24 
 
 
267 aa  138  1e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_013204  Elen_0666  short-chain dehydrogenase/reductase SDR  35.39 
 
 
343 aa  138  1e-31  Eggerthella lenta DSM 2243  Bacteria  normal  0.019294  hitchhiker  0.000464867 
 
 
-
 
NC_009485  BBta_0274  short chain dehydrogenase/reductase family protein  36 
 
 
259 aa  138  1e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  38.75 
 
 
262 aa  137  1e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_011884  Cyan7425_1889  short-chain dehydrogenase/reductase SDR  33.08 
 
 
264 aa  137  2e-31  Cyanothece sp. PCC 7425  Bacteria  normal  0.0188274  normal 
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  37.55 
 
 
271 aa  137  2e-31  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  35.8 
 
 
261 aa  136  3.0000000000000003e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5008  short-chain dehydrogenase/reductase SDR  34.3 
 
 
298 aa  136  4e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0468951  hitchhiker  0.00252787 
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  33.2 
 
 
260 aa  136  4e-31  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0055  short-chain dehydrogenase/reductase SDR  37.14 
 
 
259 aa  135  5e-31  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4770  short-chain dehydrogenase/reductase SDR  37.96 
 
 
266 aa  135  6.0000000000000005e-31  Caulobacter sp. K31  Bacteria  normal  normal  0.228735 
 
 
-
 
NC_013421  Pecwa_1556  short-chain dehydrogenase/reductase SDR  34.98 
 
 
261 aa  135  8e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  0.596662  n/a   
 
 
-
 
NC_013132  Cpin_6133  short-chain dehydrogenase/reductase SDR  31.92 
 
 
263 aa  135  8e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  32.53 
 
 
255 aa  134  1.9999999999999998e-30  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  36.29 
 
 
263 aa  133  3e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009921  Franean1_6469  short-chain dehydrogenase/reductase SDR  39.08 
 
 
263 aa  133  3e-30  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0477636 
 
 
-
 
NC_004578  PSPTO_4275  oxidoreductase, short-chain dehydrogenase/reductase family  35.63 
 
 
261 aa  131  1.0000000000000001e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3849  short-chain dehydrogenase/reductase SDR  38.82 
 
 
292 aa  131  1.0000000000000001e-29  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.858349  n/a   
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  36.5 
 
 
273 aa  131  1.0000000000000001e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  31.98 
 
 
344 aa  130  2.0000000000000002e-29  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  37.5 
 
 
255 aa  130  2.0000000000000002e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_011145  AnaeK_3912  short-chain dehydrogenase/reductase SDR  38.82 
 
 
266 aa  130  3e-29  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  33.74 
 
 
265 aa  129  4.0000000000000003e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  34 
 
 
263 aa  129  4.0000000000000003e-29  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1809  short-chain dehydrogenase/reductase SDR  37.39 
 
 
263 aa  129  4.0000000000000003e-29  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  36.89 
 
 
272 aa  129  5.0000000000000004e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  33.86 
 
 
321 aa  129  5.0000000000000004e-29  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3974  short-chain dehydrogenase/reductase SDR  35.32 
 
 
264 aa  128  1.0000000000000001e-28  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.036497  normal  0.609933 
 
 
-
 
NC_011891  A2cp1_3990  short-chain dehydrogenase/reductase SDR  38.43 
 
 
266 aa  127  2.0000000000000002e-28  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2965  Short-chain dehydrogenase/reductase SDR  36.78 
 
 
293 aa  127  2.0000000000000002e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_0875  Short-chain dehydrogenase of various substrate specificities  34.53 
 
 
264 aa  127  2.0000000000000002e-28  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00123287 
 
 
-
 
NC_010655  Amuc_0363  short-chain dehydrogenase/reductase SDR  38.46 
 
 
281 aa  126  4.0000000000000003e-28  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0350  short chain dehydrogenase/reductase family oxidoreductase  34.8 
 
 
259 aa  126  4.0000000000000003e-28  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000771311  n/a   
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  37.39 
 
 
265 aa  126  4.0000000000000003e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_009664  Krad_2814  short-chain dehydrogenase/reductase SDR  35.08 
 
 
260 aa  125  5e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.563613  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  38.4 
 
 
268 aa  125  6e-28  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  36.96 
 
 
258 aa  125  9e-28  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  34 
 
 
253 aa  125  1e-27  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  33.06 
 
 
273 aa  124  2e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
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