More than 300 homologs were found in PanDaTox collection
for query gene Dvul_2171 on replicon NC_008751
Organism: Desulfovibrio vulgaris DP4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008751  Dvul_2171  response regulator receiver protein  100 
 
 
134 aa  270  5.000000000000001e-72  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2841  response regulator receiver protein  66.94 
 
 
145 aa  155  2e-37  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_1018  response regulator receiver domain-containing protein  54.21 
 
 
131 aa  112  2.0000000000000002e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.100773  n/a   
 
 
-
 
NC_002939  GSU1291  response regulator  43.75 
 
 
123 aa  96.7  1e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2047  response regulator receiver protein  36.44 
 
 
157 aa  84  6e-16  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0637102 
 
 
-
 
NC_008576  Mmc1_2817  response regulator receiver protein  36.44 
 
 
157 aa  84  6e-16  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3210  response regulator receiver protein  40.57 
 
 
124 aa  80.1  0.000000000000008  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1827  response regulator receiver protein  38.21 
 
 
130 aa  76.3  0.0000000000001  Geobacter lovleyi SZ  Bacteria  normal  0.32093  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  37.93 
 
 
131 aa  76.6  0.0000000000001  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_007519  Dde_0710  response regulator receiver domain-containing protein  38.79 
 
 
240 aa  75.9  0.0000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0976  anti-sigma-factor antagonist  34.45 
 
 
237 aa  74.3  0.0000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_4110  response regulator receiver protein  35.96 
 
 
126 aa  74.3  0.0000000000005  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2937  two component transcriptional regulator  36.22 
 
 
255 aa  73.9  0.0000000000006  Arthrobacter sp. FB24  Bacteria  normal  0.511337  n/a   
 
 
-
 
NC_007413  Ava_3975  Cache sensor hybrid histidine kinase  33.61 
 
 
811 aa  73.6  0.0000000000008  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.0000222358  hitchhiker  0.00723661 
 
 
-
 
NC_008751  Dvul_2709  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
501 aa  73.6  0.0000000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  0.710197  normal  0.745824 
 
 
-
 
NC_011060  Ppha_2765  response regulator receiver protein  34.48 
 
 
119 aa  72.4  0.000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.557597  n/a   
 
 
-
 
NC_008576  Mmc1_0776  response regulator receiver protein  34.26 
 
 
127 aa  72  0.000000000003  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00000835167  normal  0.370558 
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  36.52 
 
 
310 aa  71.2  0.000000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_009972  Haur_3458  multi-sensor signal transduction histidine kinase  35.04 
 
 
958 aa  71.2  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0337  response regulator receiver protein  37.61 
 
 
139 aa  71.2  0.000000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0132867 
 
 
-
 
NC_009831  Ssed_2316  response regulator receiver protein  37.84 
 
 
226 aa  70.9  0.000000000006  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000147543  hitchhiker  0.000888492 
 
 
-
 
NC_008576  Mmc1_0545  two component transcriptional regulator  34.48 
 
 
250 aa  70.5  0.000000000008  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3009  GAF sensor hybrid histidine kinase  36.52 
 
 
920 aa  69.7  0.00000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.59521  normal 
 
 
-
 
NC_013173  Dbac_0418  response regulator receiver protein  34.82 
 
 
123 aa  69.7  0.00000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.22885  n/a   
 
 
-
 
NC_011886  Achl_2652  two component transcriptional regulator, winged helix family  35.43 
 
 
264 aa  70.1  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_0846  response regulator receiver protein  36.75 
 
 
139 aa  69.7  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00282438 
 
 
-
 
NC_008639  Cpha266_1786  response regulator receiver protein  37.04 
 
 
120 aa  70.1  0.00000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3788  multi-sensor hybrid histidine kinase  35.16 
 
 
1042 aa  69.3  0.00000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1380  response regulator receiver modulated diguanylate cyclase  41.67 
 
 
454 aa  69.3  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00781234  n/a   
 
 
-
 
NC_007512  Plut_0891  response regulator receiver domain-containing protein  37.61 
 
 
137 aa  68.2  0.00000000003  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_1214  response regulator receiver protein  35.4 
 
 
125 aa  68.6  0.00000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.678516  hitchhiker  0.000513941 
 
 
-
 
NC_013173  Dbac_1382  histidine kinase  34.81 
 
 
912 aa  68.2  0.00000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  36.04 
 
 
224 aa  67.8  0.00000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_2356  PAS/PAC sensor hybrid histidine kinase  36.13 
 
 
764 aa  67.8  0.00000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.736998  normal  0.0891785 
 
 
-
 
NC_009485  BBta_5491  cell cycle control histidine kinase CckA  38.1 
 
 
892 aa  68.2  0.00000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.606378  normal 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  36.94 
 
 
237 aa  67.8  0.00000000005  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0868  multi-sensor signal transduction histidine kinase  38.6 
 
 
650 aa  67.8  0.00000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0584  response regulator receiver protein  36.22 
 
 
216 aa  67.4  0.00000000006  Cyanothece sp. PCC 7425  Bacteria  normal  0.0767221  normal 
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  35.9 
 
 
508 aa  67.4  0.00000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_010623  Bphy_4270  histidine kinase  36.52 
 
 
1175 aa  67.4  0.00000000007  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3910  multi-sensor hybrid histidine kinase  34.48 
 
 
850 aa  67.4  0.00000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.302032  n/a   
 
 
-
 
NC_009943  Dole_1350  response regulator receiver protein  33.07 
 
 
147 aa  67  0.00000000008  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00189482  n/a   
 
 
-
 
NC_013595  Sros_0401  sensor histidine kinase/response regulator  34.35 
 
 
1392 aa  67  0.00000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  36.44 
 
 
124 aa  67  0.00000000008  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  34.71 
 
 
129 aa  67  0.00000000009  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_011884  Cyan7425_0749  response regulator receiver protein  33.33 
 
 
406 aa  66.6  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.893418  normal  0.0890519 
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  35.43 
 
 
469 aa  66.6  0.0000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  38.05 
 
 
452 aa  66.2  0.0000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_011145  AnaeK_2310  two component, sigma54 specific, transcriptional regulator, Fis family  35.43 
 
 
469 aa  66.6  0.0000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.294968  n/a   
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  35.9 
 
 
513 aa  66.6  0.0000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_002939  GSU1658  response regulator/GGDEF domain-containing protein  34.48 
 
 
458 aa  66.2  0.0000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.939598  n/a   
 
 
-
 
NC_013173  Dbac_1628  multi-sensor hybrid histidine kinase  33.6 
 
 
1070 aa  66.2  0.0000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1555  two component, sigma54 specific, Fis family transcriptional regulator  35.43 
 
 
467 aa  66.2  0.0000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.21045  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  33.6 
 
 
473 aa  66.2  0.0000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011146  Gbem_1662  response regulator receiver sensor signal transduction histidine kinase  34.21 
 
 
396 aa  65.9  0.0000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0387  multi-sensor hybrid histidine kinase  35.11 
 
 
1068 aa  65.9  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1781  response regulator receiver protein  33.6 
 
 
200 aa  65.5  0.0000000002  Arthrobacter sp. FB24  Bacteria  normal  0.110514  n/a   
 
 
-
 
NC_010552  BamMC406_3288  multi-sensor hybrid histidine kinase  39.06 
 
 
1032 aa  65.9  0.0000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.314025 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  33.6 
 
 
473 aa  66.2  0.0000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_004116  SAG0123  DNA-binding response regulator  34.23 
 
 
223 aa  65.5  0.0000000003  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2106  multi-sensor hybrid histidine kinase  34.43 
 
 
993 aa  65.1  0.0000000003  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.295041 
 
 
-
 
NC_010814  Glov_2461  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  31.93 
 
 
581 aa  65.1  0.0000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  33.87 
 
 
129 aa  65.5  0.0000000003  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  35.09 
 
 
462 aa  65.1  0.0000000003  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  33.6 
 
 
473 aa  65.5  0.0000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0626  histidine kinase  36.67 
 
 
1137 aa  65.5  0.0000000003  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0647  multi-sensor hybrid histidine kinase  36.67 
 
 
1137 aa  65.1  0.0000000003  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_1908  multi-sensor hybrid histidine kinase  37.39 
 
 
991 aa  65.5  0.0000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1943  GAF sensor hybrid histidine kinase  36.13 
 
 
1468 aa  65.1  0.0000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1040  hybrid sensory kinase in two-component regulatory system with RcsB and YojN  31.4 
 
 
934 aa  64.7  0.0000000004  Dickeya dadantii Ech703  Bacteria  normal  0.301921  n/a   
 
 
-
 
NC_008043  TM1040_3207  response regulator receiver protein  39.66 
 
 
124 aa  64.7  0.0000000004  Ruegeria sp. TM1040  Bacteria  normal  0.138724  normal 
 
 
-
 
NC_002939  GSU1119  sensor histidine kinase/response regulator  33.64 
 
 
420 aa  64.3  0.0000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0791  ATP-binding region ATPase domain protein  37.29 
 
 
2051 aa  64.7  0.0000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.417988  normal 
 
 
-
 
NC_007777  Francci3_3728  response regulator receiver protein  35.09 
 
 
128 aa  64.3  0.0000000005  Frankia sp. CcI3  Bacteria  normal  normal  0.445342 
 
 
-
 
NC_008009  Acid345_0520  periplasmic sensor hybrid histidine kinase  35.04 
 
 
751 aa  64.3  0.0000000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_2740  two component, sigma54 specific, transcriptional regulator, Fis family  36.04 
 
 
475 aa  64.3  0.0000000005  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3268  hybrid sensory kinase in two-component regulatory system with RcsB and YojN  34.19 
 
 
957 aa  64.3  0.0000000006  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00176531  normal 
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  34.86 
 
 
734 aa  64.3  0.0000000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_009675  Anae109_2258  two component, sigma54 specific, Fis family transcriptional regulator  33.07 
 
 
468 aa  63.9  0.0000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.428008  normal  0.0222917 
 
 
-
 
NC_007512  Plut_2012  response regulator receiver domain-containing protein  31.25 
 
 
122 aa  64.3  0.0000000006  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.631712 
 
 
-
 
NC_014148  Plim_2762  PAS sensor protein  35.34 
 
 
1135 aa  63.9  0.0000000006  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.449168  n/a   
 
 
-
 
NC_008009  Acid345_1970  response regulator receiver protein  33.05 
 
 
123 aa  64.3  0.0000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  35.94 
 
 
470 aa  64.3  0.0000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011830  Dhaf_4779  two component, sigma54 specific, transcriptional regulator, Fis family  32.26 
 
 
494 aa  63.9  0.0000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4135  periplasmic sensor hybrid histidine kinase  33.9 
 
 
922 aa  63.9  0.0000000007  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.000000370631  normal  0.0140414 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  34.26 
 
 
216 aa  63.5  0.0000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011891  A2cp1_2835  two component, sigma54 specific, transcriptional regulator, Fis family  36.04 
 
 
475 aa  63.5  0.0000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.019348  n/a   
 
 
-
 
NC_007413  Ava_4696  GAF sensor hybrid histidine kinase  33.91 
 
 
1917 aa  63.5  0.0000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  0.257042  normal 
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  34.26 
 
 
216 aa  63.5  0.0000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0738  integral membrane sensor hybrid histidine kinase  34.96 
 
 
925 aa  63.9  0.0000000008  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  38.46 
 
 
491 aa  63.5  0.0000000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_007005  Psyr_1307  response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt  39.45 
 
 
789 aa  63.5  0.0000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.105152  hitchhiker  0.00575971 
 
 
-
 
NC_007413  Ava_4753  PAS/PAC sensor hybrid histidine kinase  34.75 
 
 
630 aa  63.5  0.0000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1040  PAS/PAC sensor hybrid histidine kinase  35.83 
 
 
664 aa  63.5  0.0000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1704  multi-sensor hybrid histidine kinase  32.03 
 
 
1168 aa  63.5  0.0000000009  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_1328  Signal transduction histidine kinase-like protein  35.29 
 
 
763 aa  63.5  0.0000000009  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4386  histidine kinase  33.91 
 
 
411 aa  63.5  0.0000000009  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2551  response regulator receiver sensor signal transduction histidine kinase  33.33 
 
 
396 aa  63.5  0.000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  1.14529e-19 
 
 
-
 
NC_010725  Mpop_2632  multi-sensor hybrid histidine kinase  38.05 
 
 
906 aa  62.8  0.000000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2173  PAS/PAC sensor hybrid histidine kinase  35.4 
 
 
867 aa  63.2  0.000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00129243  normal  0.0294734 
 
 
-
 
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