Gene Ava_4135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4135 
Symbol 
ID3681211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp5152475 
End bp5155243 
Gene Length2769 bp 
Protein Length922 aa 
Translation table11 
GC content37% 
IMG OID637719481 
Productperiplasmic sensor hybrid histidine kinase 
Protein accessionYP_324629 
Protein GI75910333 
COG category[T] Signal transduction mechanisms 
COG ID[COG4252] Predicted transmembrane sensor domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000370631 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0140414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGTCAT CTGCAAAAAC AATTATCGGC TATATACACA AGGTATGTTT CCAAGATTGG 
CGCAGTATAT TCATGACAGC ACCAGTCGTG GCAATATGCG TCATGACTGG AGGAATGGCG
GGGTTATTTC AACTGCTGGA ATGGAACATG ATGGAGCAAT ATTATGCTCT ACGTCCTGTT
GAATCAATAG ACAAACGGAT TTTAATTGTT ACTATTGATG AACAAGACAT CACTCAAATT
GGCAAATGGC CTATTCCTGA CCTGATTTTA GCCAAGCTAA TTGTTAAACT CAAAGCACAA
AAACCAGCAA CTATAGGCTT GGATATCTAT CGAGATTTGC CAGTAGAACC AGGTCATCAA
GAATTGGTGG GAGTGATTAA ATCTACGCCT AACTTAATTG GAATCAAAAA ATTAGTAGGG
GATCAAGTTG CTCCATCACC TACTTTATCT GAACTAGGTC AAATTGCACT TGCTGATTTA
GTCGCAGATA CAGATGGTAA AGTCAGGCGC GGTTTATTAT CTGCTGGTGA TAGTGAGGAG
AAAATTTTTT TAGGATTAGC ACCTCGCTTA AGTCTGATGT ATCTTCAAAG TAAAGGTATT
GCTTTAGAGG AACTAAATCC AACTGGCACT TCTTTACGGT TAGGGAAAGC AGTATTTACA
CCTTTGACTG GCGAAGAATT TAGTTATCGA GGTACAGATG TTGGAGGATA CCAAATTATG
TTGAATTACC GTGGTTTTCA AGGTAATTTT GACACTGTGA AAATGCGGGA TATCCTCAAT
GATTCTATAT CATCAGAATT AATACGCGAT CGCATTATTT TGATTGGAAC TACGGCTAAG
AGTATTAATG ATTTTGTTAA CGTTGGTTAC AGTCACAATG TGCAGGATGA CGAGAAACGC
ATGGCTGGGG TAGTAGTTCA TGCCAATTTA GTCAGCCAAA TTTTAAGTGC TGCTCTTGAT
GGTAGACCAT TGTTGCGAGT TTGTTCTGAG CAAGCAGAGT GGCTATTGAT ATTTTTTTGG
TCTTTTATCA ATAGTGTTGT TACTTGGTAT GGGTTGCAAG TCAACTCTCA GCGCAAACAG
TCTTTACCAG GATGGCCGAT TCTGGTGATT TTATTGAGTA CAAGTATAAT CTTCGGTAGT
AGCTATACTG CATTTATGAT TGGTTGGTGG ATTCCTGTAA TGTCACCACT GTTGACAACT
TTTCTGTCTA TAATTGTTAC TACTAATCTG TATAAACAAT TACAACTAGA AAAAGCTAAC
CAGCAACTCC AAGATTATTC TCGCACATTG GAAGAAAAAG TGCGCGATCG CACCCAAGAG
TTAGAAACCG CCAAAATTGC TGCTGATGTT GCCAATCAAG CTAAAAGTGA ATTTTTAGCA
AGCATGAGTC ATGAGTTGCG TACACCCCTC AATGGGATTT TAGGATACGC ACAAATCCTA
GAACGCTCTG AAAACATAGC GCCGACAGTA TTAGAAGGCA TTAACATTAT TCATCAGTGT
GGTTCTCACT TGCTTACTCT CATCAACGAT ATTTTAGACT TGTCCAAAAT CGAGGCGGGA
AAACTGGAAT TACACAATAC GGATTTTGAT TTTTCCTACT TCCTTACAGG AGTAGTAGAA
ATGTGCCGTA TTCGTGCTTT ACAAAAAGGT ATCTCTTTTC ATTATTTACC AGATCCCCAT
CTCCCTCAAG CAATTAATGC TGATGAAAAA CGTTTACGAC AAATAATAAT TAATTTACTT
GGTAATGCCA TTAAGTTTAC TGAGACAGGT GGAGTCAATT TCACAATACA AGTCCTAGAA
GTAGGAGCCA ATTTCCACAA AATCAGATTT CAAGTGGAAG ATACAGGAGT GGGAATGACT
CCTGAACAAT TGACAAAGAT TTTTTTACCT TTTGAGCAAG TAGGAGATAA AAGTAAACAA
GTAGAAGGTA CCGGATTAGG TCTAGCTATT AGTTGTAAAA TGGCTGAATT AATGGGTGGT
CAAATTCAAG TAGATAGCAT TTTGGGAACT GGTAGCAAAT TTTGGCTAGA TTTAAATTTA
AATATTATCA GTCACTGGTT ACAAACATCT AGTATATTTC ATAAGAAAAA AATTATCGGT
ATTCAAGGCA AACAACCAAG AATTCTCGTT GTAGATGACA AATGGGAAAA CCGTTCTATA
ATTTGTAATT TCTTACGATC AATTGGTTTT GAATGCCTTG AAGCCACCAA TGGACAAGAA
GGATTAAATA TAGCAGTAAC AAATCAGCCT GATTTGATTA TTACTGACTT AGCTATGCCA
GTTATAGATG GCTTTGAAAT GATCCAAACC TTAAGAAGTC TACCTCAAAC ATCCAACGTC
ACCATTTTAG TATCTTCTGC CAGTGTGTTT GAAAGTGATA GAAAAAAAAG CTTGCAAATA
GGAGGAAATG AATTTTTACC AAAACCTTTA GAAATTGATA AATTACTCCA GTATTTACAA
GATTATTTAC AACTTGATTG GATTTATATA GAAGATAGCA AACAAACAAA AGTTTCTGAA
AATCAACCGT CTCAGTTTAA TAAACATCAA TTGATAGTTA CGCCGCCAAT TTCAGCGCTT
GATAAGCTAT TGGATTTGTC TATGAGAGGC AACATCAAAG GAATACAAAT AATATTGAAT
GAAATAGAGG AATTAGATGC CACTGGTAAT CTTACCGGCT TTGTGACACA AGTTAGACAA
TTATGCGATA GCTTTCAAAT TAAACAAATC CGCGAATTAA TAAAATATTT AAAAACTGGC
ACATCATGA
 
Protein sequence
MRSSAKTIIG YIHKVCFQDW RSIFMTAPVV AICVMTGGMA GLFQLLEWNM MEQYYALRPV 
ESIDKRILIV TIDEQDITQI GKWPIPDLIL AKLIVKLKAQ KPATIGLDIY RDLPVEPGHQ
ELVGVIKSTP NLIGIKKLVG DQVAPSPTLS ELGQIALADL VADTDGKVRR GLLSAGDSEE
KIFLGLAPRL SLMYLQSKGI ALEELNPTGT SLRLGKAVFT PLTGEEFSYR GTDVGGYQIM
LNYRGFQGNF DTVKMRDILN DSISSELIRD RIILIGTTAK SINDFVNVGY SHNVQDDEKR
MAGVVVHANL VSQILSAALD GRPLLRVCSE QAEWLLIFFW SFINSVVTWY GLQVNSQRKQ
SLPGWPILVI LLSTSIIFGS SYTAFMIGWW IPVMSPLLTT FLSIIVTTNL YKQLQLEKAN
QQLQDYSRTL EEKVRDRTQE LETAKIAADV ANQAKSEFLA SMSHELRTPL NGILGYAQIL
ERSENIAPTV LEGINIIHQC GSHLLTLIND ILDLSKIEAG KLELHNTDFD FSYFLTGVVE
MCRIRALQKG ISFHYLPDPH LPQAINADEK RLRQIIINLL GNAIKFTETG GVNFTIQVLE
VGANFHKIRF QVEDTGVGMT PEQLTKIFLP FEQVGDKSKQ VEGTGLGLAI SCKMAELMGG
QIQVDSILGT GSKFWLDLNL NIISHWLQTS SIFHKKKIIG IQGKQPRILV VDDKWENRSI
ICNFLRSIGF ECLEATNGQE GLNIAVTNQP DLIITDLAMP VIDGFEMIQT LRSLPQTSNV
TILVSSASVF ESDRKKSLQI GGNEFLPKPL EIDKLLQYLQ DYLQLDWIYI EDSKQTKVSE
NQPSQFNKHQ LIVTPPISAL DKLLDLSMRG NIKGIQIILN EIEELDATGN LTGFVTQVRQ
LCDSFQIKQI RELIKYLKTG TS