| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3788 |
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| Symbol | |
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| ID | 4924179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4505567 |
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| End bp | 4508695 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165414 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001095913 |
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| Protein GI | 127514716 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGCGTC ACTATCGGGA CAAGATTGCC CAGGGCATAG TCTATAAGCT GAATCTGGCC
ACCTTAGTGT GCGCCCTGAT CATCTCAGGC TTTATCGCCC TCTATTACTA TGAAGAGATG
ACCGAGCGCA CCCAGTATCA GGTCGACTAT GAGATCGCCC AAGTGTCTGT GTCGCTGCGA
CTCGCCCTAG AGGCCAGCAC AGACTTCAGC AACATGCGCA GGGTGGTCAA CGGCCTGGCG
GCTCAGGGGA GCATCAAGCG TCTGGTGCTG TTCGATCCCC GCGAGCAACA GATAGTGGCC
GATAACCTGG GGCAGTATCT CGGCAGTCCG CTGTCGACCA GCCTGGCCCC GGAACTGGCG
GAGATGGTCA GGCTGGTCAG CGATAAACAG AGTTCCAAGG AGGTCTGGCG CCAGGGCAGC
ATAGTGCATC AGGTGCAGCA GGTGTATCTG ATCTCTCCCG AGTTGCAGCG CCTTCGGGCC
TATGTGCTCT ATGTCAGGTA CGATGCCAAG GAGATCGAGG CCTATAGTCT CGAGGAGCTG
ATCCACTATG TGAGCTTCCT GCTGCTGGGT TTTGCCATAC TGCTCACGGT CAACCTCTAT
GTGCAGCACA GAGTGCTGCT GGATCCCATT CGCCGTATCC GGCGTCAGAT AGAGGCCTTC
GGCGGTCAGA AGACCATACG CCTGGACAGC GACGATGAGT TCGGCGTGCT GGTTAACAGC
TACAACGAGG CGGTCAGCGC CCGTAATCAG AAGCAGCTCG AGCTGCAAAA ATCGCGGCGC
TATATCGACA ACATCACCAA CGTGATCCCG ATTCAGCTGG CCTATGTGGA CGCCCAGAGC
CGCTATCGTT TCATCAACCA ACACTATCTG CAGTGGCTCG GCAAGACCGA AGAGGATGTG
CTGGATCAGA CGGTGGAGGC GGTCCAGCCC GCGGATGTCT ACCAGCTGAT AAAACCCTAT
CAGCAAGGTG TGCTGGCGGG CAATAAGCAG GTGTTTGAGG CGGAGACCAT AGATGCGGAT
CAGGCTCCCA GATTCTTCCA TATCACCTAT GTGCCGGACG TGGGTGACGA TGGTCAGGTG
GAGGGCTATT TCATCTGTGT CGAAGACCTG ACCCGGATGA AGCTCAACGA GCGCAAGATA
GAAACCTACG CCCAGGAGAT GGAGTTTAGT AACTGGGCGC TGTCGGAGGC GCGAGAGAAG
GCCGAGGTCG CCGCCAAGAC CAAGGAGGAT TTTCTCGCCT GCATGAGTCA TGAGATCCGC
ACCCCGATGA ACGGTGTCAT AGGCATTCTG GGGCTGCTGG GGGAGACCCA GCTGTCGCCG
ATGCAGAAGC GTTATGTAGA CGTGGCCTCG GCCAGCGCCG ATTCCCTGCT GTCGCTGCTC
AACGATATTC TGGATTTCTC TAAGATAGAG TCGGGCAAGT TCGAGATTGA GGCGATCGAG
TTTGACCTGG TGGAGCTGTT GGATCTCTTC GTGCAGTCCG TGTCCCTCAA GCTGGAGGAG
CGTCACCTGC CGCTGTTTGT GGATATCACC CAGTTGCAGT ATCGCTACGT GGTCGGCGAC
CCCAGTCGCC TGCGTCAGAT CCTGGTGAAT CTGGTAGGCA ATGCCATCAA GTTTACCGAG
GAGGGCTGGA TCGCCTTGCG ACTCTCGAAC CGCCTGAGCG AGTCGGGCGA GGTGCTGCTC
TCCTGCGAGG TGGAAGATAC CGGCATAGGC ATAGCCAAAG AGAAACTGGC CATGTTGTTT
AACCCCTTCA TACAGGTCGA TAGCTCCACC ACCCGCATGT TTGGCGGCAC CGGGCTGGGG
CTCTCCATCG CCAAACGCCT GTGCGAGCTG ATGCAGGGAG AGATCAAGGT CAGGAGTCAG
CAGGAGGTGG GCAGCATCTT CAGCTTTACC CTGACTCAGC AGCTGGCCGA CAGCGACAAG
ATGATAGATT GGCGCGCTGG TCTGTCGCCC GAGCGGGTGA CCCTCATGGG GCAGCTGGGC
GCCTTCGAGC GCATGCTGGG CGAGCTGCTT ACTAGCTGGG GTGCCAGGGT GAGCTACCTG
GAAGAGGAGG ATGCCATCCT CGAGACGGAT GTGATCATCT ACAGCTTCGC CCCTCGACGG
GAGGCCTTTG TCGAGGAGTT AAATGCCTGG CGTGAACTGG TGGGGCAGCA TGCAGATCGC
CCAAATACCA GAGTCCTGCC GCTGCTCTCC TATTGGCAGC AGACAGAATT CGAGAAACAG
GATGCCAGGG TGCCACACCT GGGCAGACCC CTGAATATCC GCCAGCTGAT CCGCGCCCTG
TCTGATCGCG CCGATGAGGA GATGATCGAG CCTGTCATAG AGCCGATAGT GGAACCCAGC
ATGCCGGACA AGCCCAAGGT ATTGCTGGTG GAAGATAACA AGGTCAACCA GATGGTGGCC
CTCGGCATGC TTCACCAGCT GGGAGTGCAG GCCGATGTCG CCAGCAATGG CCGTGAGGCG
CTGGCGCTGC TGTCGGCGCT GCAGGGGAAC CCCTATCAGC TGATCCTGAT GGATTGCCTG
ATGCCCGAGA TGGATGGCTT TCAGGCGACG GCGGCGATTC GCGAGGGGCA GGGGGGCAGC
CAGTTCTGCG CCCTGCCCAT CATCGCCCTG ACGGCCAATG CCATGAAGGG CGACAGGGAG
CACTGCATAC GCGCGGGGAT GGACGACTAC CTGACCAAGC CGCTGGTGCT TAGCGTCCTG
AAGGAGTGCC TCTATCGCTG GTTCTCTCTG AGTCAGCAAA ATTATGAGGC GGCCCTGGGC
CATGACCCGG ATGTTGAGAC ATTGCCCACG CCGATCGAAG CCGAGAGTCA GCTGTTCGAT
CGCGACAGCG CCCTGGCGCT AATGTCAGGG GATGAGGCGC TGCTGGATGA GGTGTTGCAG
GTGTTTGTCG AGGAGATGCA GGATCACAGA AAGGCCTTTA TCGAGGGGAT AGCGGCCGCC
GATTGCACTG CTATTCGCTC CAGCGTCCAC GCCATCAAGG GCGCCGCCAG TAATCTCAGC
ATGACGGCGC TGGTGGAGCT TGCCCGCCAG CTGGAGGCCG ATGCCCGCCG CGGTGATCTG
CAGGCGGTGC TCGCCGGTCG CGAGGCCTTT CTCGAGCTGC TCGAGGATAC CCTGGCCTGC
TGTCACTGA
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| Protein sequence | MWRHYRDKIA QGIVYKLNLA TLVCALIISG FIALYYYEEM TERTQYQVDY EIAQVSVSLR
LALEASTDFS NMRRVVNGLA AQGSIKRLVL FDPREQQIVA DNLGQYLGSP LSTSLAPELA
EMVRLVSDKQ SSKEVWRQGS IVHQVQQVYL ISPELQRLRA YVLYVRYDAK EIEAYSLEEL
IHYVSFLLLG FAILLTVNLY VQHRVLLDPI RRIRRQIEAF GGQKTIRLDS DDEFGVLVNS
YNEAVSARNQ KQLELQKSRR YIDNITNVIP IQLAYVDAQS RYRFINQHYL QWLGKTEEDV
LDQTVEAVQP ADVYQLIKPY QQGVLAGNKQ VFEAETIDAD QAPRFFHITY VPDVGDDGQV
EGYFICVEDL TRMKLNERKI ETYAQEMEFS NWALSEAREK AEVAAKTKED FLACMSHEIR
TPMNGVIGIL GLLGETQLSP MQKRYVDVAS ASADSLLSLL NDILDFSKIE SGKFEIEAIE
FDLVELLDLF VQSVSLKLEE RHLPLFVDIT QLQYRYVVGD PSRLRQILVN LVGNAIKFTE
EGWIALRLSN RLSESGEVLL SCEVEDTGIG IAKEKLAMLF NPFIQVDSST TRMFGGTGLG
LSIAKRLCEL MQGEIKVRSQ QEVGSIFSFT LTQQLADSDK MIDWRAGLSP ERVTLMGQLG
AFERMLGELL TSWGARVSYL EEEDAILETD VIIYSFAPRR EAFVEELNAW RELVGQHADR
PNTRVLPLLS YWQQTEFEKQ DARVPHLGRP LNIRQLIRAL SDRADEEMIE PVIEPIVEPS
MPDKPKVLLV EDNKVNQMVA LGMLHQLGVQ ADVASNGREA LALLSALQGN PYQLILMDCL
MPEMDGFQAT AAIREGQGGS QFCALPIIAL TANAMKGDRE HCIRAGMDDY LTKPLVLSVL
KECLYRWFSL SQQNYEAALG HDPDVETLPT PIEAESQLFD RDSALALMSG DEALLDEVLQ
VFVEEMQDHR KAFIEGIAAA DCTAIRSSVH AIKGAASNLS MTALVELARQ LEADARRGDL
QAVLAGREAF LELLEDTLAC CH
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