Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3788 |
Symbol | |
ID | 4924179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4505567 |
End bp | 4508695 |
Gene Length | 3129 bp |
Protein Length | 1042 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640165414 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001095913 |
Protein GI | 127514716 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGCGTC ACTATCGGGA CAAGATTGCC CAGGGCATAG TCTATAAGCT GAATCTGGCC ACCTTAGTGT GCGCCCTGAT CATCTCAGGC TTTATCGCCC TCTATTACTA TGAAGAGATG ACCGAGCGCA CCCAGTATCA GGTCGACTAT GAGATCGCCC AAGTGTCTGT GTCGCTGCGA CTCGCCCTAG AGGCCAGCAC AGACTTCAGC AACATGCGCA GGGTGGTCAA CGGCCTGGCG GCTCAGGGGA GCATCAAGCG TCTGGTGCTG TTCGATCCCC GCGAGCAACA GATAGTGGCC GATAACCTGG GGCAGTATCT CGGCAGTCCG CTGTCGACCA GCCTGGCCCC GGAACTGGCG GAGATGGTCA GGCTGGTCAG CGATAAACAG AGTTCCAAGG AGGTCTGGCG CCAGGGCAGC ATAGTGCATC AGGTGCAGCA GGTGTATCTG ATCTCTCCCG AGTTGCAGCG CCTTCGGGCC TATGTGCTCT ATGTCAGGTA CGATGCCAAG GAGATCGAGG CCTATAGTCT CGAGGAGCTG ATCCACTATG TGAGCTTCCT GCTGCTGGGT TTTGCCATAC TGCTCACGGT CAACCTCTAT GTGCAGCACA GAGTGCTGCT GGATCCCATT CGCCGTATCC GGCGTCAGAT AGAGGCCTTC GGCGGTCAGA AGACCATACG CCTGGACAGC GACGATGAGT TCGGCGTGCT GGTTAACAGC TACAACGAGG CGGTCAGCGC CCGTAATCAG AAGCAGCTCG AGCTGCAAAA ATCGCGGCGC TATATCGACA ACATCACCAA CGTGATCCCG ATTCAGCTGG CCTATGTGGA CGCCCAGAGC CGCTATCGTT TCATCAACCA ACACTATCTG CAGTGGCTCG GCAAGACCGA AGAGGATGTG CTGGATCAGA CGGTGGAGGC GGTCCAGCCC GCGGATGTCT ACCAGCTGAT AAAACCCTAT CAGCAAGGTG TGCTGGCGGG CAATAAGCAG GTGTTTGAGG CGGAGACCAT AGATGCGGAT CAGGCTCCCA GATTCTTCCA TATCACCTAT GTGCCGGACG TGGGTGACGA TGGTCAGGTG GAGGGCTATT TCATCTGTGT CGAAGACCTG ACCCGGATGA AGCTCAACGA GCGCAAGATA GAAACCTACG CCCAGGAGAT GGAGTTTAGT AACTGGGCGC TGTCGGAGGC GCGAGAGAAG GCCGAGGTCG CCGCCAAGAC CAAGGAGGAT TTTCTCGCCT GCATGAGTCA TGAGATCCGC ACCCCGATGA ACGGTGTCAT AGGCATTCTG GGGCTGCTGG GGGAGACCCA GCTGTCGCCG ATGCAGAAGC GTTATGTAGA CGTGGCCTCG GCCAGCGCCG ATTCCCTGCT GTCGCTGCTC AACGATATTC TGGATTTCTC TAAGATAGAG TCGGGCAAGT TCGAGATTGA GGCGATCGAG TTTGACCTGG TGGAGCTGTT GGATCTCTTC GTGCAGTCCG TGTCCCTCAA GCTGGAGGAG CGTCACCTGC CGCTGTTTGT GGATATCACC CAGTTGCAGT ATCGCTACGT GGTCGGCGAC CCCAGTCGCC TGCGTCAGAT CCTGGTGAAT CTGGTAGGCA ATGCCATCAA GTTTACCGAG GAGGGCTGGA TCGCCTTGCG ACTCTCGAAC CGCCTGAGCG AGTCGGGCGA GGTGCTGCTC TCCTGCGAGG TGGAAGATAC CGGCATAGGC ATAGCCAAAG AGAAACTGGC CATGTTGTTT AACCCCTTCA TACAGGTCGA TAGCTCCACC ACCCGCATGT TTGGCGGCAC CGGGCTGGGG CTCTCCATCG CCAAACGCCT GTGCGAGCTG ATGCAGGGAG AGATCAAGGT CAGGAGTCAG CAGGAGGTGG GCAGCATCTT CAGCTTTACC CTGACTCAGC AGCTGGCCGA CAGCGACAAG ATGATAGATT GGCGCGCTGG TCTGTCGCCC GAGCGGGTGA CCCTCATGGG GCAGCTGGGC GCCTTCGAGC GCATGCTGGG CGAGCTGCTT ACTAGCTGGG GTGCCAGGGT GAGCTACCTG GAAGAGGAGG ATGCCATCCT CGAGACGGAT GTGATCATCT ACAGCTTCGC CCCTCGACGG GAGGCCTTTG TCGAGGAGTT AAATGCCTGG CGTGAACTGG TGGGGCAGCA TGCAGATCGC CCAAATACCA GAGTCCTGCC GCTGCTCTCC TATTGGCAGC AGACAGAATT CGAGAAACAG GATGCCAGGG TGCCACACCT GGGCAGACCC CTGAATATCC GCCAGCTGAT CCGCGCCCTG TCTGATCGCG CCGATGAGGA GATGATCGAG CCTGTCATAG AGCCGATAGT GGAACCCAGC ATGCCGGACA AGCCCAAGGT ATTGCTGGTG GAAGATAACA AGGTCAACCA GATGGTGGCC CTCGGCATGC TTCACCAGCT GGGAGTGCAG GCCGATGTCG CCAGCAATGG CCGTGAGGCG CTGGCGCTGC TGTCGGCGCT GCAGGGGAAC CCCTATCAGC TGATCCTGAT GGATTGCCTG ATGCCCGAGA TGGATGGCTT TCAGGCGACG GCGGCGATTC GCGAGGGGCA GGGGGGCAGC CAGTTCTGCG CCCTGCCCAT CATCGCCCTG ACGGCCAATG CCATGAAGGG CGACAGGGAG CACTGCATAC GCGCGGGGAT GGACGACTAC CTGACCAAGC CGCTGGTGCT TAGCGTCCTG AAGGAGTGCC TCTATCGCTG GTTCTCTCTG AGTCAGCAAA ATTATGAGGC GGCCCTGGGC CATGACCCGG ATGTTGAGAC ATTGCCCACG CCGATCGAAG CCGAGAGTCA GCTGTTCGAT CGCGACAGCG CCCTGGCGCT AATGTCAGGG GATGAGGCGC TGCTGGATGA GGTGTTGCAG GTGTTTGTCG AGGAGATGCA GGATCACAGA AAGGCCTTTA TCGAGGGGAT AGCGGCCGCC GATTGCACTG CTATTCGCTC CAGCGTCCAC GCCATCAAGG GCGCCGCCAG TAATCTCAGC ATGACGGCGC TGGTGGAGCT TGCCCGCCAG CTGGAGGCCG ATGCCCGCCG CGGTGATCTG CAGGCGGTGC TCGCCGGTCG CGAGGCCTTT CTCGAGCTGC TCGAGGATAC CCTGGCCTGC TGTCACTGA
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Protein sequence | MWRHYRDKIA QGIVYKLNLA TLVCALIISG FIALYYYEEM TERTQYQVDY EIAQVSVSLR LALEASTDFS NMRRVVNGLA AQGSIKRLVL FDPREQQIVA DNLGQYLGSP LSTSLAPELA EMVRLVSDKQ SSKEVWRQGS IVHQVQQVYL ISPELQRLRA YVLYVRYDAK EIEAYSLEEL IHYVSFLLLG FAILLTVNLY VQHRVLLDPI RRIRRQIEAF GGQKTIRLDS DDEFGVLVNS YNEAVSARNQ KQLELQKSRR YIDNITNVIP IQLAYVDAQS RYRFINQHYL QWLGKTEEDV LDQTVEAVQP ADVYQLIKPY QQGVLAGNKQ VFEAETIDAD QAPRFFHITY VPDVGDDGQV EGYFICVEDL TRMKLNERKI ETYAQEMEFS NWALSEAREK AEVAAKTKED FLACMSHEIR TPMNGVIGIL GLLGETQLSP MQKRYVDVAS ASADSLLSLL NDILDFSKIE SGKFEIEAIE FDLVELLDLF VQSVSLKLEE RHLPLFVDIT QLQYRYVVGD PSRLRQILVN LVGNAIKFTE EGWIALRLSN RLSESGEVLL SCEVEDTGIG IAKEKLAMLF NPFIQVDSST TRMFGGTGLG LSIAKRLCEL MQGEIKVRSQ QEVGSIFSFT LTQQLADSDK MIDWRAGLSP ERVTLMGQLG AFERMLGELL TSWGARVSYL EEEDAILETD VIIYSFAPRR EAFVEELNAW RELVGQHADR PNTRVLPLLS YWQQTEFEKQ DARVPHLGRP LNIRQLIRAL SDRADEEMIE PVIEPIVEPS MPDKPKVLLV EDNKVNQMVA LGMLHQLGVQ ADVASNGREA LALLSALQGN PYQLILMDCL MPEMDGFQAT AAIREGQGGS QFCALPIIAL TANAMKGDRE HCIRAGMDDY LTKPLVLSVL KECLYRWFSL SQQNYEAALG HDPDVETLPT PIEAESQLFD RDSALALMSG DEALLDEVLQ VFVEEMQDHR KAFIEGIAAA DCTAIRSSVH AIKGAASNLS MTALVELARQ LEADARRGDL QAVLAGREAF LELLEDTLAC CH
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