Gene BamMC406_3288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3288 
Symbol 
ID6179518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp196457 
End bp199555 
Gene Length3099 bp 
Protein Length1032 aa 
Translation table11 
GC content67% 
IMG OID641683062 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001809976 
Protein GI172062325 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.314025 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCAA AGCTCAAGAG ACTTGTTTCG TACCCCGCCG TGGCCGGTCG CAAGCCATTC 
GAGCCAAGTC GCGTCCGGCG GCAGCAGCAG TTCCTGCTAT ATGCCAGCGG CGCGGCGATC
TCGGTGTTCA TTCTGGTGTG CGCGGCGCTC GTATTGCTGC TCGACGTGCA GGAGTCCCTC
GAGCGCTTCC GGATCGAGTT CACACGGCGC AGGGCCGAAC TCGTTGCCGA GGTGGCGATC
ATGAGGGCAC TCCGGAACCG CTACGTCGAG GACATGGAGC TGCAATGGGC CAGCGTCGTC
GAAAATCCGC GAAGCCTGCC CGGGGTACTC GCCGGCAGGC ACGGCAAGCA GACGTTCATC
GGGCGGAAGG GGCGAATTGC GATCGCCGCG TTCGCCGACA TCCCGCCGGT CGTATCAGCG
AACAGTCACT TGGCTTACCT CGCTCGCTCT CTCGAGCCGG TCGAGTTGAC GGGCGTCCTG
CCGCCGCCAC AACCGGCCGA TCCGGGCGGT ACTTCCTATC TGATTGATCC GAACGGCGAT
TTCATCGTTG CGGCAGGGCA TCCGTTGGTA AAACGAGCGC TTGCGCTGCC AGGCGGTTTC
GATGTAAGGG CCCTCGTCGA GCAATTGCGA CCGGTGACGA ACGATACATC CGTATCGATG
GCGCCCGTCG CTCGTCAAAA CACGATGGCG CTTGAGCGGC GATTCGATCC GGTACTCGGA
CGCTCCGTGC TGCGGATGGT GCAATGGGTA CTTGGGGCGA ACGGCAGGCC GGTCGTCTGG
TTCGTCATCA ACAGCCCGCC GCTGATCGAG GGGATACTGC GCTCGCCGGG TGCCGGCAGG
GAATATGCGC TCGTCGATTC CAGCGGAAAT CTCCTGCTTG GCCGGCAACC CGACAGCACG
ATGGTGGCTC GCGCGCTCCA GCATGCGCGC CACGACGATG GCGAGCGCGC GGCCGCACAT
CGCGTCGGCA TCAACTTCGT CGTCAGCGAC AGGGTACCGA GATCGGACGA GGTGGTGATG
GCGACCATCT CGTGGCGTGC CGTTCTGAGC GACGTAGCGT TGCGCGCGAG CCTGACCGTC
GCGCCCGCGC TCTTCGCAAT CGCGCTGCTG TGGGTTGCAA TCGTGATGTT CGACCGGCGC
GCACTGCGTC CGGCGAATCG GCGCGCGATT CGCCTGATCG AAAGCGAGGC GCTCAACCGC
ACGCTGATCC GCACGGCGCC GGCCGGGCTC GTGTTGCTGT CGTTTGCCGA CGGCGAAACG
ATCATGCGCA ACGACACGCT GATCGCTTAC GAGCAGGACG TGTCGGGTGA GCCGCTCGGC
AAGCGCTTGT GGCGCGCGTA CCGGGACGGC GCGCCCGCCG GCAACGCGCG TACCCGCGTG
ACGCGGGAGC TGGCCGTCGA GCGCCCGGGG CATGGCACCG TCTATCTCGA CGCACATATC
GTGCGCACCC GGTACCGCGG GATCGACGTG CTGCTGTGCA CGCTGCTCGA CATCACGACC
CGCAAGCAGG CGGAGGAGAA GTTGCGCGAG GCGCGCGCGG CCGCCGAGTT CGCGAACAAG
GCGAAGTCGA CGTTCCTCGC GACGATGAGC CACGAGATCC GCACGCCGCT CAACGCGATC
ATCGGCAACC TGGAACTGAT GGAGCGCGCG CAGATGGCGG TGCCGCTGCG GCGCCGGCTG
GGGACGATCA TGTCGTCGTC CGATGCGCTG CTGCGCGTGA TCAACGACGT GCTCGACCTG
TCGAAGGCCG AGTCGAACCA GATGGTGCTG GAAAGCATTC CGTTCGACCT GCGGCGTGTC
GTGAACGACG TGGCCGCGAT CTTCCGCCCG CTCGCGGATG CGAAAAACCT TGCGCTGACG
TGCCGCATCG CGCCGGATCT CGCCAACGGT TACGTGGGCG ATTCGACCCG GCTGCGGCAA
CTGGTGTCGA ACCTCGTCAG CAATGCGATC AAGTTTACGA AGCGCGGCGG CGTGACGATC
GACGTGCGGC TTGCAAAGGC GGGCCCGGCC GGCCGTGGCG TCGAAATCGC AGTCAGCGAT
ACGGGCATCG GCATTCCCGA AGACAGCCTG CCGACGCTGT TCGACGTCTA CGTCCAGACC
GATGCGTCGA TCTACCGGCG CTTCGGCGGC ACGGGGCTCG GGCTGCCGCT GTGCCGACGC
ATCGTGACGC TGATGGGTGG GGCGCTGAAT GTCGACAGCC GTCTCGGCGA AGGCACGATT
TTCGTGGCTG CGTTGCCGTT GCCCGAAGCT CAGTCCGGCT GGCAAGACGA TGCGCCGGAA
CCCGCGGCGC TCGCGGATGC CGTGCGCGGG TACGGAGCAG AGGCGGAATC CGAAACGGGT
GCGGAGGCTG ACGCACGCGC GGAGGCCGAC GATGGCGAAC CGCTGCGCGT GCTCGTCGCC
GAGGATCATC CGGCAAGCCG GGCGTTGCTG CGCGACCAGG TCGACGCGTT GGGCTACGAC
GCGACGATCG TTTCGAACGG CATCGAGGCG ATGCGCGCCT TCTTCGAGCG ACCGTACGAC
GTCGTGCTGA CCGATCTCGG CATGCCTGAA CTCGACGGCT TCGCGCTGGC GAATTTTCTC
CGCGAACAGG GCGCGAAGGT GCCGGTGATC GCGATGACCG CGCACGCGAC AGACGAGGAT
CGCCGGCGTT GCGAACAGGC CGGCGCTGTG GAGATCGTGC TCAAGCCGTT GTCGATCGAG
ATGCTCGACG CGGCGTTGCG GCGGCATGCG GGGCGCGATG TGGCGTCGCC GCGACCGGCG
CGCGCGCACG CGCCGGTCGC GGCCGCAATG ACCGACGAAG TGCGGCGCAC GCTGCACGAG
ACGACGCTGC ATTCTCTCGC GGCGATCGGC GACGCGCTCG CGAGCGGCGA CGCGGATACG
CTGCACATCG AGCTGCATTC GATGCGCGGC GGCTTCGCGC TGGCGGGCGA CACGGACGCG
CGCGACGCGT GTGCAAGCGC CGAGCGGGCG ATGGCCGACG GAGGTCCGGA CGACGTCCGG
CGTATTTGGC CGGACGTCGA AGCTGCAATC GAGCAAGCAC TCGACCGCTT GCGCCTGCCT
GGCCCGAACG AGGGGGCTGC TACTGATACG AAAACGTAA
 
Protein sequence
MPAKLKRLVS YPAVAGRKPF EPSRVRRQQQ FLLYASGAAI SVFILVCAAL VLLLDVQESL 
ERFRIEFTRR RAELVAEVAI MRALRNRYVE DMELQWASVV ENPRSLPGVL AGRHGKQTFI
GRKGRIAIAA FADIPPVVSA NSHLAYLARS LEPVELTGVL PPPQPADPGG TSYLIDPNGD
FIVAAGHPLV KRALALPGGF DVRALVEQLR PVTNDTSVSM APVARQNTMA LERRFDPVLG
RSVLRMVQWV LGANGRPVVW FVINSPPLIE GILRSPGAGR EYALVDSSGN LLLGRQPDST
MVARALQHAR HDDGERAAAH RVGINFVVSD RVPRSDEVVM ATISWRAVLS DVALRASLTV
APALFAIALL WVAIVMFDRR ALRPANRRAI RLIESEALNR TLIRTAPAGL VLLSFADGET
IMRNDTLIAY EQDVSGEPLG KRLWRAYRDG APAGNARTRV TRELAVERPG HGTVYLDAHI
VRTRYRGIDV LLCTLLDITT RKQAEEKLRE ARAAAEFANK AKSTFLATMS HEIRTPLNAI
IGNLELMERA QMAVPLRRRL GTIMSSSDAL LRVINDVLDL SKAESNQMVL ESIPFDLRRV
VNDVAAIFRP LADAKNLALT CRIAPDLANG YVGDSTRLRQ LVSNLVSNAI KFTKRGGVTI
DVRLAKAGPA GRGVEIAVSD TGIGIPEDSL PTLFDVYVQT DASIYRRFGG TGLGLPLCRR
IVTLMGGALN VDSRLGEGTI FVAALPLPEA QSGWQDDAPE PAALADAVRG YGAEAESETG
AEADARAEAD DGEPLRVLVA EDHPASRALL RDQVDALGYD ATIVSNGIEA MRAFFERPYD
VVLTDLGMPE LDGFALANFL REQGAKVPVI AMTAHATDED RRRCEQAGAV EIVLKPLSIE
MLDAALRRHA GRDVASPRPA RAHAPVAAAM TDEVRRTLHE TTLHSLAAIG DALASGDADT
LHIELHSMRG GFALAGDTDA RDACASAERA MADGGPDDVR RIWPDVEAAI EQALDRLRLP
GPNEGAATDT KT