More than 300 homologs were found in PanDaTox collection
for query gene Dvul_0404 on replicon NC_008751
Organism: Desulfovibrio vulgaris DP4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008751  Dvul_0404  response regulator receiver protein  100 
 
 
151 aa  298  1e-80  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.134088 
 
 
-
 
NC_011769  DvMF_1772  response regulator receiver protein  85.43 
 
 
151 aa  263  8e-70  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011883  Ddes_0816  response regulator receiver protein  54.42 
 
 
157 aa  159  1e-38  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0654  response regulator receiver protein  60.17 
 
 
413 aa  143  9e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.113697  normal 
 
 
-
 
NC_009943  Dole_2335  response regulator receiver protein  56.52 
 
 
411 aa  134  4e-31  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000388714  n/a   
 
 
-
 
NC_008554  Sfum_0656  response regulator receiver protein  54.24 
 
 
129 aa  130  6e-30  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.663964  normal 
 
 
-
 
NC_007519  Dde_0328  response regulator receiver domain-containing protein  55.56 
 
 
406 aa  124  4.0000000000000003e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.918345  n/a   
 
 
-
 
NC_013173  Dbac_2271  response regulator receiver protein  49.56 
 
 
127 aa  122  1e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.420434  n/a   
 
 
-
 
NC_007519  Dde_0324  response regulator receiver domain-containing protein  57.8 
 
 
127 aa  121  4e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.581793  n/a   
 
 
-
 
NC_008751  Dvul_0407  response regulator receiver protein  52.1 
 
 
128 aa  120  8e-27  Desulfovibrio vulgaris DP4  Bacteria  normal  0.627834  normal  0.12665 
 
 
-
 
NC_011769  DvMF_1769  response regulator receiver protein  50.41 
 
 
129 aa  119  9.999999999999999e-27  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_0321  response regulator receiver domain-containing protein  50.42 
 
 
122 aa  111  4.0000000000000004e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2269  response regulator receiver protein  46.72 
 
 
130 aa  109  2.0000000000000002e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.740525  n/a   
 
 
-
 
NC_009943  Dole_1357  response regulator receiver protein  43.33 
 
 
144 aa  106  1e-22  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.48275  n/a   
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  43.8 
 
 
151 aa  104  4e-22  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1807  response regulator receiver protein  42.62 
 
 
139 aa  102  1e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2331  response regulator receiver protein  44.17 
 
 
142 aa  101  3e-21  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000000425244  n/a   
 
 
-
 
NC_009943  Dole_1350  response regulator receiver protein  41.67 
 
 
147 aa  100  9e-21  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00189482  n/a   
 
 
-
 
NC_011769  DvMF_1773  response regulator receiver sensor signal transduction histidine kinase  42.98 
 
 
408 aa  96.3  1e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  42.86 
 
 
157 aa  94  6e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1360  response regulator receiver sensor signal transduction histidine kinase  42.11 
 
 
403 aa  93.2  1e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0173  response regulator receiver protein  40.68 
 
 
121 aa  93.2  1e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2037  response regulator receiver protein  42.37 
 
 
120 aa  92  2e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0652  response regulator receiver protein  44.54 
 
 
122 aa  92  2e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.429078  normal 
 
 
-
 
NC_013173  Dbac_0313  response regulator receiver protein  40.83 
 
 
143 aa  92  3e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0254543  n/a   
 
 
-
 
NC_013173  Dbac_0314  response regulator receiver protein  42.61 
 
 
131 aa  92  3e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0234873  n/a   
 
 
-
 
NC_008751  Dvul_0403  response regulator receiver sensor signal transduction histidine kinase  44.83 
 
 
374 aa  91.3  4e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.150899 
 
 
-
 
NC_009943  Dole_1351  response regulator receiver protein  41.67 
 
 
141 aa  90.9  5e-18  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000171187  n/a   
 
 
-
 
NC_013173  Dbac_2273  response regulator receiver protein  39.13 
 
 
139 aa  90.9  6e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.103597  n/a   
 
 
-
 
NC_009943  Dole_1341  response regulator receiver protein  42.37 
 
 
301 aa  89.7  1e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1358  response regulator receiver protein  39.42 
 
 
144 aa  89.7  1e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.107991  n/a   
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  37.82 
 
 
451 aa  90.1  1e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_009943  Dole_1361  response regulator receiver protein  41.9 
 
 
147 aa  89.4  2e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2034  response regulator receiver protein  40 
 
 
300 aa  89  2e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0632  response regulator receiver protein  38.71 
 
 
135 aa  87  8e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1991  response regulator receiver protein  41.18 
 
 
153 aa  86.3  1e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_0636  response regulator receiver protein  42.86 
 
 
124 aa  86.3  1e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.621219  normal 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  37.93 
 
 
455 aa  85.5  2e-16  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_013173  Dbac_2042  response regulator receiver protein  37.61 
 
 
147 aa  85.5  2e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2039  two component, sigma54 specific, Fis family transcriptional regulator  43.7 
 
 
476 aa  85.5  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.238588  normal 
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  40 
 
 
461 aa  85.5  3e-16  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_013456  VEA_001908  nitrogen regulation protein NR(I)  37.19 
 
 
467 aa  84.7  4e-16  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00584  response regulator  37.19 
 
 
467 aa  84.3  5e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_2334  response regulator receiver protein  41.03 
 
 
151 aa  84  6e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_0327  response regulator receiver domain-containing protein  43.48 
 
 
142 aa  84  7e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4144  nitrogen metabolism transcriptional regulator, NtrC, Fis family  34.35 
 
 
477 aa  83.6  8e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  38.14 
 
 
476 aa  83.6  9e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_013173  Dbac_2035  response regulator receiver protein  36.75 
 
 
129 aa  83.2  0.000000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0814  response regulator receiver protein  37.5 
 
 
132 aa  83.2  0.000000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  33.57 
 
 
444 aa  83.6  0.000000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal 
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  37.82 
 
 
456 aa  83.2  0.000000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  42.37 
 
 
458 aa  82.8  0.000000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  33.57 
 
 
444 aa  82.4  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_007519  Dde_3717  response regulator receiver sensor signal transduction histidine kinase  40.68 
 
 
401 aa  82.4  0.000000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1352  response regulator receiver protein  41.03 
 
 
139 aa  82.4  0.000000000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00001959  n/a   
 
 
-
 
NC_011769  DvMF_1988  response regulator receiver protein  38.33 
 
 
119 aa  82  0.000000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_0010  PAS/PAC sensor hybrid histidine kinase  37.7 
 
 
508 aa  81.3  0.000000000000004  Geobacter metallireducens GS-15  Bacteria  normal  0.0502065  normal 
 
 
-
 
NC_009943  Dole_2333  response regulator receiver protein  40 
 
 
117 aa  81.3  0.000000000000004  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000000530573  n/a   
 
 
-
 
NC_011883  Ddes_1566  response regulator receiver protein  36.51 
 
 
126 aa  80.9  0.000000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  38.98 
 
 
394 aa  80.9  0.000000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2737  response regulator receiver domain-containing protein  41.82 
 
 
139 aa  80.9  0.000000000000006  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.00154696  n/a   
 
 
-
 
NC_007760  Adeh_0833  two component, sigma54 specific, Fis family transcriptional regulator  38.46 
 
 
466 aa  80.5  0.000000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.96038  n/a   
 
 
-
 
NC_007519  Dde_0695  response regulator receiver domain-containing protein  35.59 
 
 
141 aa  80.1  0.000000000000009  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.396926  n/a   
 
 
-
 
NC_011891  A2cp1_0883  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
466 aa  79.7  0.00000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.879866  n/a   
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  35.83 
 
 
457 aa  80.1  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3715  multi-sensor signal transduction histidine kinase  33.96 
 
 
653 aa  79.3  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0266  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.59 
 
 
470 aa  79.3  0.00000000000002  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0268  two component, sigma54 specific, transcriptional regulator, Fis family  34.9 
 
 
456 aa  79  0.00000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.0540037 
 
 
-
 
NC_011145  AnaeK_0879  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
466 aa  79  0.00000000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0258  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.59 
 
 
470 aa  79.3  0.00000000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3962  nitrogen regulation protein NR(I)  38.1 
 
 
470 aa  78.6  0.00000000000002  Dickeya dadantii Ech703  Bacteria  normal  0.389706  n/a   
 
 
-
 
NC_009052  Sbal_0266  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.59 
 
 
470 aa  79.3  0.00000000000002  Shewanella baltica OS155  Bacteria  normal  0.649687  n/a   
 
 
-
 
NC_011663  Sbal223_0261  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  33.59 
 
 
470 aa  79.3  0.00000000000002  Shewanella baltica OS223  Bacteria  normal  normal  0.024996 
 
 
-
 
NC_013421  Pecwa_4505  nitrogen regulation protein NR(I)  38.1 
 
 
470 aa  78.2  0.00000000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  0.565329  n/a   
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  33.62 
 
 
513 aa  78.6  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  39.5 
 
 
365 aa  78.2  0.00000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0018  response regulator receiver protein  38.26 
 
 
135 aa  78.6  0.00000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  decreased coverage  0.00000218096  n/a   
 
 
-
 
NC_012912  Dd1591_4159  nitrogen regulation protein NR(I)  38.1 
 
 
470 aa  78.6  0.00000000000003  Dickeya zeae Ech1591  Bacteria  normal  0.086406  n/a   
 
 
-
 
NC_012917  PC1_4222  nitrogen regulation protein NR(I)  38.1 
 
 
470 aa  78.2  0.00000000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.327829  n/a   
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  37.19 
 
 
462 aa  78.6  0.00000000000003  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_008228  Patl_1028  nitrogen metabolism transcriptional regulator, NtrC, Fis family  37.5 
 
 
468 aa  77.8  0.00000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.070914  n/a   
 
 
-
 
NC_012793  GWCH70_3334  response regulator receiver protein  36.07 
 
 
120 aa  78.2  0.00000000000004  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0633  response regulator receiver protein  36.97 
 
 
133 aa  78.2  0.00000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.546392  normal 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  38.14 
 
 
394 aa  78.2  0.00000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0259  two component signal transduction response regulator  35 
 
 
513 aa  77.8  0.00000000000005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01588  two-component system, response regulator  33.6 
 
 
464 aa  77.4  0.00000000000006  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.396226  n/a   
 
 
-
 
NC_009943  Dole_1347  response regulator receiver protein  36.07 
 
 
688 aa  77.4  0.00000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
458 aa  77.4  0.00000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  35.09 
 
 
458 aa  77.4  0.00000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1081  two component  34.38 
 
 
441 aa  77.4  0.00000000000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.136641  normal  0.653656 
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  34.45 
 
 
469 aa  77.4  0.00000000000007  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  38.24 
 
 
455 aa  77  0.00000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  41.38 
 
 
473 aa  77.4  0.00000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0009  multi-sensor signal transduction histidine kinase  37.82 
 
 
508 aa  77.4  0.00000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1843  two component, sigma54 specific, transcriptional regulator, Fis family  38.39 
 
 
465 aa  77  0.00000000000008  Thauera sp. MZ1T  Bacteria  normal  0.798265  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  39.57 
 
 
215 aa  77  0.00000000000008  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  34.17 
 
 
457 aa  77  0.00000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0371  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.33 
 
 
470 aa  76.3  0.0000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.160254  n/a   
 
 
-
 
NC_009943  Dole_1362  response regulator receiver protein  31.4 
 
 
159 aa  76.6  0.0000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  33.91 
 
 
458 aa  76.6  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
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