More than 300 homologs were found in PanDaTox collection
for query gene Rfer_2737 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_2737  response regulator receiver domain-containing protein  100 
 
 
139 aa  285  1e-76  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.00154696  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  43.33 
 
 
472 aa  104  4e-22  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  42.62 
 
 
471 aa  102  2e-21  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_009943  Dole_2811  multi-sensor signal transduction histidine kinase  46.23 
 
 
498 aa  100  5e-21  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.782124  n/a   
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  43.86 
 
 
470 aa  98.6  3e-20  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  40.91 
 
 
129 aa  98.2  4e-20  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_013173  Dbac_1807  response regulator receiver protein  41.12 
 
 
139 aa  97.4  5e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2017  response regulator CheY  40.18 
 
 
129 aa  97.4  6e-20  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  40.87 
 
 
474 aa  97.4  6e-20  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  39.83 
 
 
469 aa  96.7  9e-20  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  44.95 
 
 
464 aa  96.7  1e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  42.99 
 
 
126 aa  96.3  1e-19  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  42.99 
 
 
126 aa  96.3  1e-19  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  44.95 
 
 
463 aa  96.3  1e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  44.95 
 
 
464 aa  96.3  1e-19  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  42.11 
 
 
470 aa  95.5  2e-19  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  35.51 
 
 
151 aa  95.5  2e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  40.18 
 
 
129 aa  95.5  2e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_009675  Anae109_4152  two component, sigma54 specific, Fis family transcriptional regulator  42.02 
 
 
480 aa  95.1  3e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.038607 
 
 
-
 
NC_002939  GSU1117  response regulator  41.28 
 
 
127 aa  94.7  4e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  40.19 
 
 
131 aa  94.7  4e-19  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_008554  Sfum_0632  response regulator receiver protein  43.12 
 
 
135 aa  94  7e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0417  two component, sigma54 specific, Fis family transcriptional regulator  41.18 
 
 
474 aa  93.6  9e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.45134  n/a   
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  38.14 
 
 
469 aa  92.8  1e-18  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2366  two component, sigma54 specific, Fis family transcriptional regulator  43.93 
 
 
385 aa  93.2  1e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000342445  n/a   
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  42.57 
 
 
515 aa  92.4  2e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_0445  two component, sigma54 specific, transcriptional regulator, Fis family  41.18 
 
 
481 aa  92.4  2e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  39.68 
 
 
459 aa  92.4  2e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  42.59 
 
 
466 aa  92.4  2e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
465 aa  92.4  2e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0620  response regulator receiver protein  37.4 
 
 
142 aa  91.7  3e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0446  two component, sigma54 specific, transcriptional regulator, Fis family  41.18 
 
 
481 aa  91.7  3e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2365  two component signal transduction response regulator  35.29 
 
 
575 aa  90.9  5e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1988  two component, sigma54 specific, transcriptional regulator, Fis family  40.44 
 
 
509 aa  90.5  6e-18  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2923  two component, sigma54 specific, Fis family transcriptional regulator  41.9 
 
 
450 aa  90.5  6e-18  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.726219 
 
 
-
 
NC_008751  Dvul_2709  response regulator receiver sensor signal transduction histidine kinase  41.75 
 
 
501 aa  90.9  6e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.710197  normal  0.745824 
 
 
-
 
NC_009483  Gura_3572  two component, sigma-54 specific, Fis family transcriptional regulator  41.03 
 
 
457 aa  90.5  7e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1351  response regulator receiver protein  40.68 
 
 
141 aa  90.5  7e-18  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000171187  n/a   
 
 
-
 
NC_009523  RoseRS_2305  two component transcriptional regulator  38.69 
 
 
263 aa  90.1  8e-18  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2506  sensory box protein/sigma-54 dependent DNA-binding response regulator  36.44 
 
 
564 aa  90.1  9e-18  Geobacter sulfurreducens PCA  Bacteria  normal  0.92979  n/a   
 
 
-
 
NC_009943  Dole_0885  response regulator receiver protein  37.61 
 
 
205 aa  90.1  9e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0324  two component, sigma54 specific, transcriptional regulator, Fis family  38.02 
 
 
465 aa  89.7  1e-17  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.266606  n/a   
 
 
-
 
NC_009943  Dole_1350  response regulator receiver protein  35.96 
 
 
147 aa  89.4  1e-17  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00189482  n/a   
 
 
-
 
NC_011145  AnaeK_0313  two component, sigma54 specific, transcriptional regulator, Fis family  38.02 
 
 
465 aa  89.7  1e-17  Anaeromyxobacter sp. K  Bacteria  normal  0.0494225  n/a   
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  42.2 
 
 
457 aa  89  2e-17  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  42.2 
 
 
457 aa  89  2e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0987  two component, sigma54 specific, transcriptional regulator, Fis family  42.74 
 
 
489 aa  89  2e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  42.45 
 
 
343 aa  89.4  2e-17  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_009943  Dole_0884  response regulator receiver protein  33.61 
 
 
425 aa  89  2e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1843  two component, sigma54 specific, transcriptional regulator, Fis family  36.43 
 
 
465 aa  88.6  2e-17  Thauera sp. MZ1T  Bacteria  normal  0.798265  n/a   
 
 
-
 
NC_002936  DET1294  DNA-binding response regulator  35.9 
 
 
180 aa  88.6  3e-17  Dehalococcoides ethenogenes 195  Bacteria  unclonable  0.00000125664  n/a   
 
 
-
 
NC_010718  Nther_0252  response regulator receiver protein  35.51 
 
 
239 aa  87.8  4e-17  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.114255 
 
 
-
 
NC_009675  Anae109_4257  two component, sigma54 specific, Fis family transcriptional regulator  37.82 
 
 
463 aa  87.8  4e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0886  response regulator receiver protein  37.4 
 
 
207 aa  87.8  5e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  39.29 
 
 
450 aa  87.8  5e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0684  two component, sigma54 specific, Fis family transcriptional regulator  40.98 
 
 
456 aa  87.4  6e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2668  response regulator receiver protein  33.58 
 
 
675 aa  87.4  6e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4238  sigma-54 factor interaction domain-containing protein  36.52 
 
 
467 aa  87.4  6e-17  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0751  two component, sigma54 specific, transcriptional regulator, Fis family  38.26 
 
 
490 aa  87.4  6e-17  Spirosoma linguale DSM 74  Bacteria  normal  0.664159  normal 
 
 
-
 
NC_008751  Dvul_0092  response regulator receiver protein  41.12 
 
 
682 aa  87.4  6e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  36.75 
 
 
452 aa  87  7e-17  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_009455  DehaBAV1_1106  response regulator receiver protein  35.9 
 
 
180 aa  87  7e-17  Dehalococcoides sp. BAV1  Bacteria  normal  0.0674112  n/a   
 
 
-
 
NC_002939  GSU1658  response regulator/GGDEF domain-containing protein  40.57 
 
 
458 aa  87  8e-17  Geobacter sulfurreducens PCA  Bacteria  normal  0.939598  n/a   
 
 
-
 
NC_008009  Acid345_2604  two component, sigma54 specific, Fis family transcriptional regulator  36.59 
 
 
459 aa  87  8e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1352  response regulator receiver protein  42.34 
 
 
139 aa  87  9e-17  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00001959  n/a   
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  36.43 
 
 
458 aa  86.7  9e-17  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_008554  Sfum_0821  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  42.57 
 
 
1139 aa  86.7  9e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.187038 
 
 
-
 
NC_013173  Dbac_2037  response regulator receiver protein  36.84 
 
 
120 aa  86.3  1e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1260  two component, sigma54 specific, transcriptional regulator, Fis family  38.6 
 
 
452 aa  86.3  1e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.0000000000141339 
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  36.97 
 
 
513 aa  86.3  1e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  37.96 
 
 
463 aa  86.3  1e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  39.47 
 
 
456 aa  86.3  1e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1380  response regulator receiver modulated diguanylate cyclase  36.13 
 
 
454 aa  86.3  1e-16  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00781234  n/a   
 
 
-
 
NC_009943  Dole_2401  two component, sigma54 specific, Fis family transcriptional regulator  37.21 
 
 
449 aa  86.3  1e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1078  DNA-binding response regulator  35.9 
 
 
180 aa  85.9  2e-16  Dehalococcoides sp. VS  Bacteria  unclonable  0.00000000000063084  n/a   
 
 
-
 
NC_007498  Pcar_0259  two component signal transduction response regulator  39.05 
 
 
513 aa  85.9  2e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  38.83 
 
 
471 aa  85.9  2e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2321  nitrogen regulation protein NR(I)  34.71 
 
 
468 aa  85.5  2e-16  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0010  PAS/PAC sensor hybrid histidine kinase  34.92 
 
 
508 aa  85.9  2e-16  Geobacter metallireducens GS-15  Bacteria  normal  0.0502065  normal 
 
 
-
 
NC_007517  Gmet_1055  two component, sigma54 specific, Fis family transcriptional regulator  37.72 
 
 
508 aa  85.5  2e-16  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00334907 
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  41.35 
 
 
461 aa  85.5  2e-16  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_008554  Sfum_0656  response regulator receiver protein  35.61 
 
 
129 aa  85.5  2e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.663964  normal 
 
 
-
 
NC_009943  Dole_2335  response regulator receiver protein  37.98 
 
 
411 aa  85.5  2e-16  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000388714  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  38.1 
 
 
455 aa  85.9  2e-16  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_009783  VIBHAR_00584  response regulator  34.15 
 
 
467 aa  85.1  3e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  38.53 
 
 
456 aa  85.1  3e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2396  response regulator receiver protein  35.04 
 
 
139 aa  84.7  3e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  40.52 
 
 
157 aa  85.1  3e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2549  response regulator receiver sensor signal transduction histidine kinase  40.34 
 
 
446 aa  85.1  3e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  38.53 
 
 
124 aa  85.1  3e-16  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_011769  DvMF_1772  response regulator receiver protein  39.84 
 
 
151 aa  85.1  3e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_0200  two component, sigma54 specific, transcriptional regulator, Fis family  35.45 
 
 
449 aa  84.7  4e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1994  two component signal transduction response regulator  39.05 
 
 
477 aa  84.3  4e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2232  two component, sigma54 specific, transcriptional regulator, Fis family  40.44 
 
 
509 aa  84.3  5e-16  Geobacter sp. M21  Bacteria  n/a    normal  0.0243568 
 
 
-
 
NC_011769  DvMF_1988  response regulator receiver protein  38.98 
 
 
119 aa  84.3  5e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_1361  response regulator receiver protein  38.69 
 
 
147 aa  84.3  5e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG2122  DNA-binding response regulator  41.18 
 
 
223 aa  84  6e-16  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0833  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 
466 aa  84  6e-16  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.96038  n/a   
 
 
-
 
NC_012918  GM21_1577  two component, sigma54 specific, transcriptional regulator, Fis family  41.9 
 
 
458 aa  84  6e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2823  two component, sigma54 specific, transcriptional regulator, Fis family  38.66 
 
 
447 aa  84  6e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
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