More than 300 homologs were found in PanDaTox collection
for query gene DvMF_2370 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_2370  carbamoyl phosphate synthase small subunit  100 
 
 
376 aa  778    Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.82733 
 
 
-
 
NC_008751  Dvul_0268  carbamoyl phosphate synthase small subunit  82.13 
 
 
375 aa  643    Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.583908 
 
 
-
 
NC_007519  Dde_3646  carbamoyl phosphate synthase small subunit  77.66 
 
 
375 aa  622  1e-177  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0133  carbamoyl-phosphate synthase, small subunit  66.58 
 
 
378 aa  511  1e-144  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1097  carbamoyl phosphate synthase small subunit  65.33 
 
 
376 aa  505  9.999999999999999e-143  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.643284  n/a   
 
 
-
 
NC_013223  Dret_1071  carbamoyl-phosphate synthase, small subunit  60.81 
 
 
369 aa  466  9.999999999999999e-131  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0749952  normal  0.228018 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  56.5 
 
 
380 aa  417  9.999999999999999e-116  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  52.52 
 
 
359 aa  399  9.999999999999999e-111  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  55.7 
 
 
373 aa  401  9.999999999999999e-111  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  54.96 
 
 
372 aa  397  1e-109  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  54.47 
 
 
391 aa  397  1e-109  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  55.43 
 
 
374 aa  394  1e-108  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  52.38 
 
 
374 aa  389  1e-107  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  54.5 
 
 
374 aa  390  1e-107  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  52.65 
 
 
374 aa  391  1e-107  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  52.89 
 
 
373 aa  389  1e-107  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  52.53 
 
 
376 aa  386  1e-106  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  53.14 
 
 
373 aa  385  1e-106  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  51.5 
 
 
359 aa  384  1e-105  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  48.66 
 
 
356 aa  376  1e-103  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  50.79 
 
 
372 aa  375  1e-103  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  50 
 
 
373 aa  369  1e-101  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  50.39 
 
 
373 aa  365  1e-100  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  50.39 
 
 
373 aa  365  1e-100  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  49.87 
 
 
383 aa  368  1e-100  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  50.66 
 
 
373 aa  368  1e-100  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  47.34 
 
 
358 aa  363  3e-99  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  50.92 
 
 
374 aa  360  2e-98  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  48.92 
 
 
359 aa  360  2e-98  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  51.32 
 
 
386 aa  360  2e-98  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_011898  Ccel_2913  carbamoyl-phosphate synthase, small subunit  48.38 
 
 
351 aa  360  2e-98  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  51.86 
 
 
386 aa  360  3e-98  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  50 
 
 
369 aa  359  5e-98  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_008261  CPF_2898  carbamoyl phosphate synthase small subunit  48.23 
 
 
349 aa  359  5e-98  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  46.42 
 
 
392 aa  358  9e-98  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  46.42 
 
 
392 aa  358  9e-98  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  47.24 
 
 
376 aa  357  1.9999999999999998e-97  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  49.21 
 
 
361 aa  356  2.9999999999999997e-97  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_2577  carbamoyl phosphate synthase small subunit  47.96 
 
 
349 aa  356  3.9999999999999996e-97  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_02880  carbamoyl-phosphate synthase, small subunit  48.5 
 
 
364 aa  355  8.999999999999999e-97  Halothermothrix orenii H 168  Bacteria  normal  0.422195  n/a   
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  49.73 
 
 
389 aa  355  1e-96  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  49.19 
 
 
388 aa  354  2e-96  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  50.26 
 
 
369 aa  352  5.9999999999999994e-96  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_009972  Haur_4242  carbamoyl-phosphate synthase, small subunit  49.33 
 
 
376 aa  351  1e-95  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  48.53 
 
 
377 aa  350  2e-95  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  48.8 
 
 
366 aa  349  5e-95  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  47.88 
 
 
371 aa  347  1e-94  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_011830  Dhaf_3203  carbamoyl-phosphate synthase, small subunit  47.51 
 
 
368 aa  346  4e-94  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  47.88 
 
 
369 aa  345  6e-94  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  49.6 
 
 
391 aa  345  8e-94  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  48.36 
 
 
385 aa  344  1e-93  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  48 
 
 
367 aa  343  2.9999999999999997e-93  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  49.47 
 
 
367 aa  342  5e-93  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2060  carbamoyl phosphate synthase small subunit  48.16 
 
 
394 aa  341  1e-92  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.745912 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  47.31 
 
 
380 aa  338  5.9999999999999996e-92  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  47.31 
 
 
380 aa  338  5.9999999999999996e-92  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  48.15 
 
 
379 aa  337  1.9999999999999998e-91  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  46.81 
 
 
384 aa  337  1.9999999999999998e-91  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_011898  Ccel_0615  carbamoyl-phosphate synthase, small subunit  47.45 
 
 
360 aa  337  2.9999999999999997e-91  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1915  carbamoyl-phosphate synthase, small subunit  47.47 
 
 
390 aa  335  7e-91  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  47.34 
 
 
384 aa  335  1e-90  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_013411  GYMC61_1916  carbamoyl phosphate synthase small subunit  46.52 
 
 
364 aa  334  1e-90  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_4526  carbamoyl-phosphate synthase, small subunit  48.96 
 
 
405 aa  333  4e-90  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717788  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  47.21 
 
 
381 aa  333  4e-90  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_013205  Aaci_1307  carbamoyl-phosphate synthase, small subunit  47.96 
 
 
368 aa  333  4e-90  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  47.21 
 
 
381 aa  333  4e-90  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  47.21 
 
 
381 aa  333  4e-90  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  47.21 
 
 
381 aa  333  4e-90  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  47.21 
 
 
381 aa  332  5e-90  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0950  carbamoyl-phosphate synthase small subunit  46.28 
 
 
357 aa  332  6e-90  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  45.29 
 
 
393 aa  332  9e-90  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  46.95 
 
 
381 aa  331  1e-89  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  46.42 
 
 
380 aa  331  1e-89  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  47.79 
 
 
398 aa  331  1e-89  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  46.95 
 
 
381 aa  331  1e-89  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  46.54 
 
 
381 aa  330  3e-89  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  45.89 
 
 
380 aa  328  1.0000000000000001e-88  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  45.89 
 
 
380 aa  328  1.0000000000000001e-88  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  45.89 
 
 
380 aa  328  1.0000000000000001e-88  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010320  Teth514_0661  carbamoyl phosphate synthase small subunit  44.62 
 
 
356 aa  327  2.0000000000000001e-88  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0640  carbamoyl-phosphate synthase, small subunit  45.91 
 
 
380 aa  327  2.0000000000000001e-88  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0790  carbamoyl-phosphate synthase, small subunit  45.91 
 
 
380 aa  327  2.0000000000000001e-88  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  45.85 
 
 
397 aa  326  5e-88  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_1152  carbamoyl phosphate synthase small subunit  45.95 
 
 
386 aa  326  5e-88  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  45.29 
 
 
401 aa  325  5e-88  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  48.79 
 
 
379 aa  326  5e-88  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3210  carbamoyl-phosphate synthase, small subunit  49.35 
 
 
405 aa  326  5e-88  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.295908 
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  45.89 
 
 
381 aa  325  6e-88  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.381236 
 
 
-
 
NC_008820  P9303_15771  carbamoyl phosphate synthase small subunit  47.31 
 
 
379 aa  325  6e-88  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  45.89 
 
 
380 aa  325  6e-88  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_013946  Mrub_2703  carbamoyl-phosphate synthase small subunit  46.01 
 
 
388 aa  325  1e-87  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.614253 
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  48.31 
 
 
467 aa  325  1e-87  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  45.41 
 
 
378 aa  324  1e-87  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  46.75 
 
 
394 aa  323  2e-87  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008148  Rxyl_1478  carbamoyl-phosphate synthase small subunit  49.46 
 
 
369 aa  324  2e-87  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.515532  n/a   
 
 
-
 
NC_013552  DhcVS_984  carbamoyl-phosphate synthase, small subunit  44.09 
 
 
364 aa  324  2e-87  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  46.01 
 
 
380 aa  323  3e-87  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_007802  Jann_1246  carbamoyl phosphate synthase small subunit  47.77 
 
 
384 aa  323  4e-87  Jannaschia sp. CCS1  Bacteria  normal  0.55567  normal 
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  47.24 
 
 
388 aa  322  5e-87  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_002936  DET1201  carbamoyl phosphate synthase small subunit  43.67 
 
 
364 aa  322  7e-87  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
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