More than 300 homologs were found in PanDaTox collection
for query gene Lferr_0790 on replicon NC_011206
Organism: Acidithiobacillus ferrooxidans ATCC 53993



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011761  AFE_0640  carbamoyl-phosphate synthase, small subunit  100 
 
 
380 aa  778    Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0790  carbamoyl-phosphate synthase, small subunit  100 
 
 
380 aa  778    Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  61.46 
 
 
385 aa  464  9.999999999999999e-131  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  58.98 
 
 
379 aa  458  9.999999999999999e-129  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  59.21 
 
 
379 aa  453  1.0000000000000001e-126  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  59.09 
 
 
386 aa  448  1e-125  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  56.84 
 
 
391 aa  445  1.0000000000000001e-124  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  56.88 
 
 
416 aa  446  1.0000000000000001e-124  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  56.72 
 
 
440 aa  444  1.0000000000000001e-124  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  56.84 
 
 
379 aa  445  1.0000000000000001e-124  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  56.84 
 
 
382 aa  444  1e-123  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  57.3 
 
 
382 aa  442  1e-123  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  58.33 
 
 
378 aa  442  1e-123  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  57.45 
 
 
381 aa  442  1e-123  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  56.57 
 
 
382 aa  441  1e-123  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  57.57 
 
 
378 aa  441  1e-123  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  58.45 
 
 
381 aa  444  1e-123  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  56.68 
 
 
381 aa  444  1e-123  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  58.33 
 
 
378 aa  444  1e-123  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  56.84 
 
 
382 aa  444  1e-123  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  56.57 
 
 
382 aa  438  9.999999999999999e-123  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  56.57 
 
 
382 aa  438  9.999999999999999e-123  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  56.57 
 
 
382 aa  438  9.999999999999999e-123  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  55.76 
 
 
384 aa  440  9.999999999999999e-123  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  56.28 
 
 
397 aa  439  9.999999999999999e-123  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  56.57 
 
 
382 aa  438  9.999999999999999e-123  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  56.57 
 
 
382 aa  438  9.999999999999999e-123  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  54.84 
 
 
378 aa  439  9.999999999999999e-123  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  56.57 
 
 
382 aa  438  9.999999999999999e-123  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  56.42 
 
 
381 aa  438  9.999999999999999e-123  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  56.3 
 
 
382 aa  438  9.999999999999999e-123  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  56.99 
 
 
378 aa  441  9.999999999999999e-123  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_012892  B21_00035  hypothetical protein  56.57 
 
 
382 aa  438  9.999999999999999e-123  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  56.12 
 
 
383 aa  435  1e-121  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  59.31 
 
 
379 aa  436  1e-121  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  56.3 
 
 
382 aa  436  1e-121  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  56.58 
 
 
398 aa  437  1e-121  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  56.6 
 
 
376 aa  436  1e-121  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  56.3 
 
 
391 aa  436  1e-121  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  56.5 
 
 
396 aa  437  1e-121  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  57.67 
 
 
378 aa  432  1e-120  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  56.76 
 
 
378 aa  434  1e-120  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  56.6 
 
 
393 aa  432  1e-120  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  57.03 
 
 
378 aa  432  1e-120  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  56.49 
 
 
386 aa  431  1e-120  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  56.87 
 
 
387 aa  433  1e-120  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  57.3 
 
 
378 aa  428  1e-119  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  54.64 
 
 
386 aa  428  1e-119  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  57.91 
 
 
380 aa  428  1e-119  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  54.38 
 
 
386 aa  431  1e-119  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  57.3 
 
 
378 aa  428  1e-119  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  57.3 
 
 
386 aa  428  1e-119  Pseudomonas putida F1  Bacteria  normal  normal  0.740896 
 
 
-
 
NC_013422  Hneap_1563  carbamoyl-phosphate synthase, small subunit  58.02 
 
 
377 aa  429  1e-119  Halothiobacillus neapolitanus c2  Bacteria  normal  0.878317  n/a   
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  55.53 
 
 
378 aa  426  1e-118  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  54.38 
 
 
382 aa  426  1e-118  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  56.27 
 
 
381 aa  426  1e-118  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  56.27 
 
 
381 aa  427  1e-118  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  56.64 
 
 
378 aa  426  1e-118  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  56.27 
 
 
381 aa  426  1e-118  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  56.15 
 
 
383 aa  425  1e-118  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  56.53 
 
 
381 aa  427  1e-118  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  56.27 
 
 
381 aa  426  1e-118  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  56 
 
 
381 aa  425  1e-118  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  56.27 
 
 
381 aa  426  1e-118  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0708  carbamoyl phosphate synthase small subunit  57.57 
 
 
386 aa  427  1e-118  Pseudomonas putida W619  Bacteria  normal  0.44923  normal  0.0111499 
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  56.08 
 
 
384 aa  422  1e-117  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  56 
 
 
381 aa  424  1e-117  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  55.14 
 
 
378 aa  423  1e-117  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  54.5 
 
 
401 aa  423  1e-117  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  56.06 
 
 
377 aa  424  1e-117  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  55.41 
 
 
378 aa  424  1e-117  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_012880  Dd703_0592  carbamoyl-phosphate synthase, small subunit  56.84 
 
 
382 aa  422  1e-117  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2195  carbamoyl phosphate synthase small subunit  56.49 
 
 
382 aa  423  1e-117  Cupriavidus metallidurans CH34  Bacteria  normal  0.0764461  normal  0.137113 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  55.56 
 
 
390 aa  423  1e-117  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  55.09 
 
 
381 aa  424  1e-117  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  54.38 
 
 
381 aa  422  1e-117  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  56.61 
 
 
392 aa  424  1e-117  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  54.17 
 
 
393 aa  419  1e-116  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  55.53 
 
 
390 aa  418  1e-116  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  55.41 
 
 
380 aa  421  1e-116  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_009727  CBUD_1371  carbamoyl phosphate synthase small subunit  54.74 
 
 
402 aa  421  1e-116  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  56.76 
 
 
384 aa  421  1e-116  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal 
 
 
-
 
NC_007984  BCI_0559  carbamoyl-phosphate synthase, small subunit  53.05 
 
 
381 aa  420  1e-116  Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  53.79 
 
 
385 aa  421  1e-116  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_009665  Shew185_3401  carbamoyl phosphate synthase small subunit  54.96 
 
 
391 aa  418  1e-116  Shewanella baltica OS185  Bacteria  hitchhiker  0.00720177  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1431  carbamoyl phosphate synthase small subunit  54.74 
 
 
382 aa  421  1e-116  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  55.44 
 
 
386 aa  420  1e-116  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_008322  Shewmr7_1003  carbamoyl phosphate synthase small subunit  55.17 
 
 
386 aa  419  1e-116  Shewanella sp. MR-7  Bacteria  normal  0.0354323  normal 
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  55.17 
 
 
386 aa  419  1e-116  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
NC_011663  Sbal223_1051  carbamoyl phosphate synthase small subunit  53.81 
 
 
387 aa  415  9.999999999999999e-116  Shewanella baltica OS223  Bacteria  normal  0.098868  hitchhiker  0.0000017806 
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  53.96 
 
 
394 aa  416  9.999999999999999e-116  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  54.69 
 
 
386 aa  415  9.999999999999999e-116  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
NC_008789  Hhal_1776  carbamoyl-phosphate synthase, small subunit  55.73 
 
 
379 aa  415  9.999999999999999e-116  Halorhodospira halophila SL1  Bacteria  normal  0.0616181  n/a   
 
 
-
 
NC_012912  Dd1591_0554  carbamoyl-phosphate synthase, small subunit  55.5 
 
 
381 aa  417  9.999999999999999e-116  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  54.07 
 
 
386 aa  417  9.999999999999999e-116  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  53.89 
 
 
382 aa  415  9.999999999999999e-116  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_009708  YpsIP31758_3454  carbamoyl phosphate synthase small subunit  55.23 
 
 
391 aa  415  9.999999999999999e-116  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  54.86 
 
 
380 aa  415  9.999999999999999e-116  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  55.73 
 
 
390 aa  415  9.999999999999999e-116  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  54.86 
 
 
380 aa  415  9.999999999999999e-116  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
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