More than 300 homologs were found in PanDaTox collection
for query gene Dret_2029 on replicon NC_013223
Organism: Desulfohalobium retbaense DSM 5692



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013223  Dret_2029  extracellular solute-binding protein family 3  100 
 
 
275 aa  569  1e-161  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.00497658  hitchhiker  0.00148627 
 
 
-
 
NC_007519  Dde_2764  extracellular solute-binding protein  68.73 
 
 
275 aa  417  1e-116  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2218  extracellular solute-binding protein  67.64 
 
 
275 aa  410  1e-113  Desulfovibrio vulgaris DP4  Bacteria  normal  0.120709  normal  0.459989 
 
 
-
 
NC_011769  DvMF_2787  extracellular solute-binding protein family 3  64.36 
 
 
275 aa  394  1e-109  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_1429  extracellular solute-binding protein  42.18 
 
 
271 aa  221  9.999999999999999e-57  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_3152  extracellular solute-binding protein family 3  41.09 
 
 
271 aa  214  9.999999999999999e-55  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0865808 
 
 
-
 
NC_013223  Dret_2153  extracellular solute-binding protein family 3  40.14 
 
 
273 aa  214  1.9999999999999998e-54  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0684055 
 
 
-
 
NC_011898  Ccel_1635  extracellular solute-binding protein family 3  37.1 
 
 
290 aa  196  3e-49  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0917  extracellular solute-binding protein  40.77 
 
 
270 aa  195  6e-49  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3163  extracellular solute-binding protein  32.37 
 
 
295 aa  171  9e-42  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.180854  normal 
 
 
-
 
NC_010551  BamMC406_1538  extracellular solute-binding protein  31.47 
 
 
292 aa  139  3.9999999999999997e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.133709  normal  0.898326 
 
 
-
 
NC_008060  Bcen_1137  extracellular solute-binding protein  31.47 
 
 
271 aa  138  1e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1593  extracellular solute-binding protein  31.47 
 
 
271 aa  138  1e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.227678  normal  0.74753 
 
 
-
 
NC_008542  Bcen2424_1617  extracellular solute-binding protein  31.47 
 
 
271 aa  138  1e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1515  extracellular solute-binding protein  31.47 
 
 
271 aa  137  3.0000000000000003e-31  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0607  amino acid ABC transporter amino acid-binding protein  37.34 
 
 
276 aa  136  4e-31  Bacillus anthracis str. Sterne  Bacteria  normal  0.510404  n/a   
 
 
-
 
NC_005957  BT9727_0552  glutamine ABC transporter substrate-binding protein  37.34 
 
 
276 aa  136  4e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.368136  n/a   
 
 
-
 
NC_007510  Bcep18194_A4762  ABC amino acid transporter, periplasmic ligand binding protein  31.08 
 
 
271 aa  136  4e-31  Burkholderia sp. 383  Bacteria  normal  0.739753  normal  0.149517 
 
 
-
 
NC_007530  GBAA_0640  amino acid ABC transporter amino acid-binding protein  37.34 
 
 
276 aa  136  4e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.223136  n/a   
 
 
-
 
NC_011773  BCAH820_0697  amino acid ABC transporter, amino acid-binding protein  37.34 
 
 
276 aa  136  4e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010505  Mrad2831_2212  extracellular solute-binding protein  30.71 
 
 
267 aa  135  6.0000000000000005e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0708  amino acid ABC transporter, amino acid-binding protein  37.34 
 
 
276 aa  135  6.0000000000000005e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0551  glytamine ABC transporter substrate-binding protein  37.34 
 
 
276 aa  135  6.0000000000000005e-31  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0676  amino acid ABC transporter, amino acid-binding protein  36.93 
 
 
276 aa  135  9e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0769  amino acid ABC transporter, amino acid-binding protein  36.93 
 
 
276 aa  135  9e-31  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4662  amino acid ABC transporter, amino acid-binding protein  37.34 
 
 
276 aa  134  9.999999999999999e-31  Bacillus cereus G9842  Bacteria  normal  0.257219  hitchhiker  2.83751e-21 
 
 
-
 
NC_010084  Bmul_1621  extracellular solute-binding protein  32.07 
 
 
271 aa  134  9.999999999999999e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0810697  normal  0.181323 
 
 
-
 
NC_010184  BcerKBAB4_0553  extracellular solute-binding protein  39.81 
 
 
276 aa  134  9.999999999999999e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2257  amino-acid-binding periplasmic ABC transporter protein  29.78 
 
 
284 aa  134  1.9999999999999998e-30  Ralstonia solanacearum GMI1000  Bacteria  normal  0.780862  normal 
 
 
-
 
NC_007973  Rmet_0690  extracellular solute-binding protein  33.94 
 
 
282 aa  133  3e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.370968  normal  0.982005 
 
 
-
 
NC_008836  BMA10229_A0326  polar amino acid ABC uptake transporter substrate binding protein  32.49 
 
 
271 aa  133  3.9999999999999996e-30  Burkholderia mallei NCTC 10229  Bacteria  normal  0.178009  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1670  extracellular solute-binding protein  32.49 
 
 
271 aa  133  3.9999999999999996e-30  Burkholderia mallei SAVP1  Bacteria  normal  0.720486  n/a   
 
 
-
 
NC_007434  BURPS1710b_2051  extracellular solute-binding protein  32.49 
 
 
271 aa  133  3.9999999999999996e-30  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0325389  n/a   
 
 
-
 
NC_009074  BURPS668_1883  putative amino acid ABC transporter, periplasmic amino acid-binding protein  32.49 
 
 
271 aa  133  3.9999999999999996e-30  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0835  extracellular solute-binding protein  32.49 
 
 
271 aa  133  3.9999999999999996e-30  Burkholderia mallei NCTC 10247  Bacteria  normal  0.447071  n/a   
 
 
-
 
NC_009076  BURPS1106A_1895  putative amino acid ABC transporter, periplasmic amino acid-binding protein  32.49 
 
 
271 aa  133  3.9999999999999996e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  0.299924  n/a   
 
 
-
 
NC_007651  BTH_I2450  extracellular solute-binding protein  32.49 
 
 
271 aa  132  5e-30  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1548  polar amino acid ABC transporter periplasmic ligand-binding protein  29.43 
 
 
272 aa  132  5e-30  Burkholderia xenovorans LB400  Bacteria  normal  0.159181  normal  0.942345 
 
 
-
 
NC_007347  Reut_A0396  extracellular solute-binding protein  29.35 
 
 
302 aa  131  1.0000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1633  ABC transporter related  30.64 
 
 
500 aa  131  1.0000000000000001e-29  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0541  extracellular solute-binding protein  35.95 
 
 
275 aa  130  2.0000000000000002e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1225  glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein  28.97 
 
 
298 aa  127  1.0000000000000001e-28  Burkholderia thailandensis E264  Bacteria  normal  0.905296  n/a   
 
 
-
 
NC_012791  Vapar_4038  extracellular solute-binding protein family 3  31.62 
 
 
275 aa  128  1.0000000000000001e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1497  extracellular solute-binding protein family 3  31.58 
 
 
305 aa  128  1.0000000000000001e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.165825 
 
 
-
 
NC_007434  BURPS1710b_3434  glutamate/aspartate periplasmic binding protein precursor  28.97 
 
 
297 aa  127  2.0000000000000002e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  0.110135  n/a   
 
 
-
 
NC_009076  BURPS1106A_3431  glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein  28.97 
 
 
328 aa  127  2.0000000000000002e-28  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1476  extracellular solute-binding protein family 3  38.46 
 
 
286 aa  127  2.0000000000000002e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3396  glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein  28.97 
 
 
328 aa  127  2.0000000000000002e-28  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1182  glutamate and aspartate transporter subunit  31.75 
 
 
301 aa  127  3e-28  Enterobacter sp. 638  Bacteria  normal  normal  0.0650836 
 
 
-
 
NC_007973  Rmet_0342  extracellular solute-binding protein  29.68 
 
 
302 aa  126  3e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2069  extracellular solute-binding protein family 3  33.03 
 
 
281 aa  126  4.0000000000000003e-28  Ralstonia pickettii 12D  Bacteria  normal  0.0404874  normal  0.438523 
 
 
-
 
NC_010682  Rpic_2462  extracellular solute-binding protein family 3  33.03 
 
 
281 aa  126  4.0000000000000003e-28  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1377  extracellular solute-binding protein  33.33 
 
 
277 aa  125  6e-28  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00000115158  n/a   
 
 
-
 
NC_010676  Bphyt_6965  extracellular solute-binding protein family 3  29.09 
 
 
312 aa  125  8.000000000000001e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0700  glutamate and aspartate transporter subunit  31.92 
 
 
302 aa  125  8.000000000000001e-28  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3666  extracellular solute-binding protein family 3  28.62 
 
 
301 aa  125  1e-27  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0457  extracellular solute-binding protein  30.03 
 
 
299 aa  124  2e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1779  extracellular solute-binding protein  29.78 
 
 
276 aa  124  2e-27  Enterobacter sp. 638  Bacteria  normal  hitchhiker  0.00357898 
 
 
-
 
NC_012856  Rpic12D_3343  extracellular solute-binding protein family 3  28.72 
 
 
301 aa  124  2e-27  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00623  glutamate and aspartate transporter subunit  32.03 
 
 
302 aa  123  3e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0084  amino-acid-binding periplasmic (PBP) ABC transporter protein  28.06 
 
 
301 aa  123  3e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  0.767728  normal 
 
 
-
 
NC_012892  B21_00613  hypothetical protein  32.03 
 
 
302 aa  123  3e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4737  extracellular solute-binding protein  25.63 
 
 
296 aa  123  3e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.765927  normal 
 
 
-
 
NC_012791  Vapar_1172  extracellular solute-binding protein family 3  30 
 
 
306 aa  123  4e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0564  extracellular solute-binding protein  28.62 
 
 
297 aa  123  4e-27  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1214  glutamate and aspartate transporter subunit  31.25 
 
 
298 aa  122  5e-27  Serratia proteamaculans 568  Bacteria  normal  0.839124  normal  0.912461 
 
 
-
 
NC_007953  Bxe_C0127  polar amino acid ABC transporter periplasmic ligand-binding protein  28.08 
 
 
272 aa  122  5e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0186  extracellular solute-binding protein  28.97 
 
 
297 aa  122  5e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.947811  n/a   
 
 
-
 
NC_008542  Bcen2424_0669  extracellular solute-binding protein  28.97 
 
 
297 aa  122  5e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1546  extracellular solute-binding protein family 3  25.47 
 
 
295 aa  122  7e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3755  ABC amino acid transporter, periplasmic ligand binding protein  28.62 
 
 
297 aa  122  8e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2714  extracellular solute-binding protein  29.55 
 
 
297 aa  122  9e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.784297 
 
 
-
 
NC_014165  Tbis_1124  extracellular solute-binding protein family 3  29.89 
 
 
289 aa  122  9e-27  Thermobispora bispora DSM 43833  Bacteria  normal  0.901238  normal  0.221919 
 
 
-
 
NC_010468  EcolC_2990  glutamate and aspartate transporter subunit  31.64 
 
 
302 aa  122  9e-27  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0590  extracellular solute-binding protein  28.62 
 
 
297 aa  122  9e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.325477 
 
 
-
 
NC_011353  ECH74115_0748  glutamate and aspartate transporter subunit  31.64 
 
 
302 aa  122  9e-27  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2806  extracellular solute-binding protein family 3  37.5 
 
 
281 aa  121  9.999999999999999e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009921  Franean1_1224  extracellular solute-binding protein  31.85 
 
 
323 aa  121  9.999999999999999e-27  Frankia sp. EAN1pec  Bacteria  normal  normal  0.228597 
 
 
-
 
NC_010508  Bcenmc03_0636  extracellular solute-binding protein  28.62 
 
 
297 aa  121  9.999999999999999e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2573  extracellular solute-binding protein  30.63 
 
 
297 aa  121  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0113062 
 
 
-
 
NC_010625  Bphy_7227  extracellular solute-binding protein  29.75 
 
 
262 aa  121  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  0.24118  normal 
 
 
-
 
CP001637  EcDH1_2971  extracellular solute-binding protein family 3  32.43 
 
 
302 aa  120  1.9999999999999998e-26  Escherichia coli DH1  Bacteria  normal  0.871919  n/a   
 
 
-
 
NC_003295  RSc0973  amino-acid-binding periplasmic (PBP) ABC transporter protein  27.57 
 
 
303 aa  120  1.9999999999999998e-26  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00938185  normal  0.751269 
 
 
-
 
NC_011149  SeAg_B0709  glutamate and aspartate transporter subunit  29.93 
 
 
302 aa  120  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.222651  n/a   
 
 
-
 
NC_010498  EcSMS35_0676  glutamate and aspartate transporter subunit  31.64 
 
 
302 aa  120  1.9999999999999998e-26  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0723  glutamate and aspartate transporter subunit  29.93 
 
 
302 aa  120  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2874  extracellular solute-binding protein family 3  29.24 
 
 
298 aa  120  1.9999999999999998e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011205  SeD_A0770  glutamate and aspartate transporter subunit  29.93 
 
 
302 aa  120  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0819  glutamate and aspartate transporter subunit  30.04 
 
 
302 aa  120  1.9999999999999998e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0783  glutamate and aspartate transporter subunit  30.77 
 
 
302 aa  120  3e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.131708  normal 
 
 
-
 
NC_013093  Amir_1449  extracellular solute-binding protein family 3  33.93 
 
 
295 aa  120  3.9999999999999996e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_4441  extracellular solute-binding protein family 3  27.44 
 
 
299 aa  119  3.9999999999999996e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_0826  extracellular solute-binding protein family 3  29.96 
 
 
302 aa  119  4.9999999999999996e-26  Ralstonia pickettii 12J  Bacteria  normal  0.296945  normal 
 
 
-
 
NC_009801  EcE24377A_0683  glutamate and aspartate transporter subunit  31.25 
 
 
302 aa  119  6e-26  Escherichia coli E24377A  Bacteria  normal  0.457568  n/a   
 
 
-
 
NC_012880  Dd703_4004  extracellular solute-binding protein family 3  28.25 
 
 
278 aa  119  6e-26  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4591  extracellular solute-binding protein family 3  28.46 
 
 
278 aa  119  6e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0897  extracellular solute-binding protein family 3  28.85 
 
 
303 aa  118  7.999999999999999e-26  Ralstonia pickettii 12D  Bacteria  normal  0.529927  normal  0.529014 
 
 
-
 
NC_013159  Svir_27710  amino acid-binding protein  31.64 
 
 
304 aa  117  9.999999999999999e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.620875 
 
 
-
 
NC_009513  Lreu_1512  extracellular solute-binding protein  29.18 
 
 
276 aa  117  9.999999999999999e-26  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2212  putative glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein  28.51 
 
 
359 aa  118  9.999999999999999e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
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