| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1172 |
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| Symbol | |
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| ID | 7973341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1285768 |
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| End bp | 1286688 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791768 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002943089 |
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| Protein GI | 239814179 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCCA AGGCCGCGCT GTCGTTTCTT CTTGCCGGCC TGCTGGCGGC CGCTGCGCTG
GTCGCGGCGA CCCCGGCCAG GGCGCAGCCG CAGGCCCCGG AGACCTTGAC GGGCACGCTC
GCCAAGGTGC GCGAGAGCGG CACCATCGCC ATCGGCTACC GCGAGTCGTC GGTGCCGTTT
TCCTTTCTCA ATGCACGCCA GGAGCCTGTC GGCTATTCGA TCGAGCTCTG CCGGGAACTG
GTCACGGCCA TTGAAGAGGC GGTGAACAAG AGCCTCGCGA TCAAGTGGGT GCCGGTGACC
TCCGATTCGC GCATCGATGC GGTCGAGCGC GGCACGGTCG ATCTCGAATG CGGCTCGACC
ACCAGCAACC TCGAGCGGCA AAAGCGCGTG AGCTTCTCGC CCACCATCTT CGTCTCGGGC
ACCAAGGTGC TGGTGAAGAA GGGCTCGCCG ATCAAGTCGT TCCGCGACCT GGCGGGCAAG
CGGGTGGCCG TCACCGCGGG CACCACCAAC GAGAAGACGC TGCGCGAGCT GTCGCAGAAG
TTCAGGCTCG GCATCGACCT GCGGGTGGCG CGCGACCACG CCGATTCCTT CGGGCTGGTG
AAAAGCGGCC AGGCCGACGC CTTTGCCACC GACGACGTGC TGCTCTACGG CCTGATCGCG
CGCGACGCCG CCAAGGCCCA GTACGAGGTG GTCGGCGACT ACCTCTCCTA CGACCCCTAC
GGCATCATGT ACCGCAAGGG CGACGCGCAA TTGGCCAAGG TGATCAACGA CACCTTCCAG
GTGCTGGCGC AGGACGGCGA AATCGAGCGC CAGTACAAGC GCTGGTTCCT GCGCAAGCTG
CCCACCGGGG AAAGCATCGA CCTGCCGATG AGCGCGCAGC TGGAAGCCAT CATCCAGACG
ATGTCGGTGA AGGCCGAGTA G
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| Protein sequence | MKAKAALSFL LAGLLAAAAL VAATPARAQP QAPETLTGTL AKVRESGTIA IGYRESSVPF
SFLNARQEPV GYSIELCREL VTAIEEAVNK SLAIKWVPVT SDSRIDAVER GTVDLECGST
TSNLERQKRV SFSPTIFVSG TKVLVKKGSP IKSFRDLAGK RVAVTAGTTN EKTLRELSQK
FRLGIDLRVA RDHADSFGLV KSGQADAFAT DDVLLYGLIA RDAAKAQYEV VGDYLSYDPY
GIMYRKGDAQ LAKVINDTFQ VLAQDGEIER QYKRWFLRKL PTGESIDLPM SAQLEAIIQT
MSVKAE
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