Gene RSc0084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0084 
Symbol 
ID1218887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp97383 
End bp98288 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content64% 
IMG OID637236441 
Productamino-acid-binding periplasmic (PBP) ABC transporter protein 
Protein accessionNP_518205 
Protein GI17544803 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.767728 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTTCA CCCTTCGCTG TATCCCGCTC GCGCTGGCCG GCGCGATCGC TGCGTCCGTC 
CTGCCCGCGC AGGCCGAGGC GCTCGACGGC ACGCTCAAGA AGATCCAGGA CAGCAACACC
ATCCTGATCG GCGTGCGCGA ATCGTCGATT CCGTTTTCGT ATCGCGACAG CAAGAACCAG
ATCATCGGCT TCTCGGCCGA CCTGTGCTCG CGCGTGATCG ATGCGGTCAA GCAGAAGGTC
GGCAAGCCGG ACCTGCAGGT GCAGCAGATT CCCGTCACCT CGCAGAACCG CACGGCGCTG
GTGCAGAACG GCTCGGTGGA CCTGGAGTGC GGCGTGACCA CGCACCTGAA GTCGCGCGAG
CAGCAGACGG CGTTCTCGAC CACCTTCTTC ATTGCCGCCA CGCGCCTGCT GACCAGCACG
CATTCGGGGG TGAAGGACTT CCCGGATCTG GCCGGCAAGT CGGTCATCAC CAATGCCGGC
ACCACGTCGG AGCGCATCCT GCGCAAGATG AACGACGAGA AGAAGATGAA CATGAACGTC
ATCAGCGGCA AGGACTACGG CGAGTCTTTC CTGACGCTGC AGAGCGGCCG CGTGCAGGCC
TTCATGATGG ATGACGTGCT GCTGGCCGGC GCGCGCACGC TGGCGCAGAA GCCGGCCGAC
TGGGTCGTGA CCGGCACGCC GCAGTCGTTC GAGGCCTACG GCTTCATGCT GCGCAAGGAT
GATCCCCAGT TCAAGAAGCT GGTGGACGAC ACCCTTACCG GCGTCATGAA ACGCGGCGAG
ATCAGCACGC TGTATGCCAA GTGGTTCGAG AAGCCGGTGC CGCCCAAGGG CGTCAACTTC
GGCTTCCCGA TGAGCGAGCA GCTCAAGGCG CTGTACACCA GTCCGAACGA CACGCCGTTC
GAGTAG
 
Protein sequence
MRFTLRCIPL ALAGAIAASV LPAQAEALDG TLKKIQDSNT ILIGVRESSI PFSYRDSKNQ 
IIGFSADLCS RVIDAVKQKV GKPDLQVQQI PVTSQNRTAL VQNGSVDLEC GVTTHLKSRE
QQTAFSTTFF IAATRLLTST HSGVKDFPDL AGKSVITNAG TTSERILRKM NDEKKMNMNV
ISGKDYGESF LTLQSGRVQA FMMDDVLLAG ARTLAQKPAD WVVTGTPQSF EAYGFMLRKD
DPQFKKLVDD TLTGVMKRGE ISTLYAKWFE KPVPPKGVNF GFPMSEQLKA LYTSPNDTPF
E