| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2029 |
|---|
| Symbol | |
|---|
| ID | 8419874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2327433 |
|---|
| End bp | 2328260 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645038617 |
|---|
| Product | extracellular solute-binding protein family 3 |
|---|
| Protein accession | YP_003198891 |
|---|
| Protein GI | 258406149 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00497658 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00148627 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTCG GCAAAATTCT CTTTCTGGCC GTCATTTTTG CCCTGTTCTC TGCCCAGGCA
GTGCTTGCCG GCCCCACGTA CGACCAGGTC ATGAAAGACA AGGTCATCCG CGCCGGCTTG
ATGACCGACT CCATTCCTGG TGCATTTTAC AACAAAGACA ACGAGTGGGT CGGCTTTGAC
GTCGACATCG CGAAAGAAAT CGCCAAGCGA CTCGATTGCG AACTCAAACG GGTGCCGGTG
ACCAACAAAA CCCGGATCGC CTTTGTTCAG CAGGGTCGCA TCGACATGTC TGTGGCCAAC
ATGACTCATA AACGCGAACG GGACAAATCG ATCGACTTTT CGATCACCTA CTTTTTCGAC
GGCCAAAAGC TCCTCGTCAA AAAGGGCAGC TTCGCGAACT GGGACGAGAT CGTAGGCCAG
AAGATTGCCA CCATGCAGGG CACGACCTCG GAGGTCAATC TGAAAAACAA GCTGGAAGAG
CTCGGTGACA CCAACGCCGA CGACAACGTC ATCTCCTTCC AGAAGGAATC GGAATGCTTC
CAGGCCCTGG AAATGGGCCG CGTTGCCGGC TGGTCCACAG ACTCGACCAT CCTTCTGGGC
TATGCCGCGA AGCGTCCGGG AGAATACGAA CTCATCGGCG ACTTTATCAG CGACGAACCC
TATGGCATCG GCCTGCCTGA AGACGATTCC AAATGGCGCG ACACCATCAA CTTCACCATC
CAGGACATGT GGCTGGATGG GACCTACATG GACATCTACA ACAAATGGTA TGGTCCGGAC
ACTCCGTACT CCTTCCCCAT GACTGAACAA ATCGAAGTCT GGCCCTAG
|
|---|
| Protein sequence | MRFGKILFLA VIFALFSAQA VLAGPTYDQV MKDKVIRAGL MTDSIPGAFY NKDNEWVGFD
VDIAKEIAKR LDCELKRVPV TNKTRIAFVQ QGRIDMSVAN MTHKRERDKS IDFSITYFFD
GQKLLVKKGS FANWDEIVGQ KIATMQGTTS EVNLKNKLEE LGDTNADDNV ISFQKESECF
QALEMGRVAG WSTDSTILLG YAAKRPGEYE LIGDFISDEP YGIGLPEDDS KWRDTINFTI
QDMWLDGTYM DIYNKWYGPD TPYSFPMTEQ IEVWP
|
|---|
| |