| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1538 |
|---|
| Symbol | |
|---|
| ID | 6179104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1709106 |
|---|
| End bp | 1709984 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641681299 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001808241 |
|---|
| Protein GI | 172060589 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.133709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.898326 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCTCG AACCGGCCGC CGCGCGATCC GCGGCGGCCT TCATGACAAA TCAGGTCGTG
CTCATGAAAA TCCACACTCT CGCTACGTGG CTCGTCGGGG CCGCGCTCGT TACCGCAGGC
ACGGTCGCGC ATGCGGACCG TCTCGACGAC ATCAAGAAGG CCGGCGTGCT GCGCGTCGCG
ACGTTCGACA GCAACCCGCC GTTCGGTTAT GTCGATGCGA AGAACAACCA CATCGTCGGC
CTCGACGTCG ATTATGCGAA GGCACTCGCC GACAAGCTCG GCGTAAAGCT GCAACTCCAG
CCGACCAACC CCGCGAACCG CATTCCGTTC CTGACGTCCG GCAAGGTCGA TCTCGTGCTT
GCGAACTTCA CGATCACCGA CGAGCGCGCG AAGCAGGTCG ACTTCAGCAT TCCGTATTTC
TCGTCGGGCC AGCAGTTTCT CGCGAAGAAG GGCGTGCTGA AATCGGCCGA CCAGTTGAAC
GGCCTGCGCG TCGGCGCGGA CAAGGGCACG ACGAACGAGA TCACGCTGCG CGAGAAATTC
CCGAAGGCGA CGATCGTCGC GTACGACGAC ACGCCGTTCG CGTTCGCCGC GCTGCGCGCC
GGCAACGTGC AGGCGATCAC GCAGGACGGC CCGAAGCTGA TCGGCCTGCT CGCGAACGTG
CCCGACAAGC AGAACTACGA GATCCCGGCC TTCACGATCT CGAACGACTA CATGGGCGTC
GGCGTGCCGA AGGGCGAGAC ACGCCTGCTC GGCTTCGTCA ACGACACGCT GAAGGGGCTC
GAGGCGAATG GCCGCGCCGT GCAAATCTAC GACGCATGGT TCGGGCCGAC GACGAAGACG
CCGCTCACGC GCATCTTCCG CATCGGCGAC AAGACCTGA
|
|---|
| Protein sequence | MFLEPAAARS AAAFMTNQVV LMKIHTLATW LVGAALVTAG TVAHADRLDD IKKAGVLRVA
TFDSNPPFGY VDAKNNHIVG LDVDYAKALA DKLGVKLQLQ PTNPANRIPF LTSGKVDLVL
ANFTITDERA KQVDFSIPYF SSGQQFLAKK GVLKSADQLN GLRVGADKGT TNEITLREKF
PKATIVAYDD TPFAFAALRA GNVQAITQDG PKLIGLLANV PDKQNYEIPA FTISNDYMGV
GVPKGETRLL GFVNDTLKGL EANGRAVQIY DAWFGPTTKT PLTRIFRIGD KT
|
|---|
| |