More than 300 homologs were found in PanDaTox collection
for query gene Dfer_5542 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013037  Dfer_5542  two component transcriptional regulator, LuxR family  100 
 
 		 212 aa  426  1e-119  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.448293 
 
 
-
 
NC_013730  Slin_4823  two component transcriptional regulator, LuxR family  44.17 
 
 		 214 aa  173  9.999999999999999e-43  Spirosoma linguale DSM 74  Bacteria  normal  0.103693  normal  0.11387 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  37.14 
 
 		 215 aa  137  1e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  37.14 
 
 		 215 aa  137  1e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  37.2 
 
 		 214 aa  136  2e-31  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  37.2 
 
 		 214 aa  135  3.0000000000000003e-31  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  36.67 
 
 		 215 aa  135  5e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  36.67 
 
 		 215 aa  135  5e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  35.05 
 
 		 213 aa  135  5e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  36.67 
 
 		 215 aa  135  5e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  36.67 
 
 		 215 aa  135  5e-31  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  36.67 
 
 		 215 aa  135  5e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  34.47 
 
 		 217 aa  133  1.9999999999999998e-30  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  37.5 
 
 		 227 aa  132  3e-30  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  33.33 
 
 		 214 aa  132  3e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  34.29 
 
 		 230 aa  132  3.9999999999999996e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  37.44 
 
 		 214 aa  132  5e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.0560765 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  37.44 
 
 		 214 aa  132  5e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  37.44 
 
 		 214 aa  132  5e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  1  hitchhiker  0.00685344 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  31.9 
 
 		 214 aa  131  7.999999999999999e-30  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  35.71 
 
 		 215 aa  130  2.0000000000000002e-29  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  36.97 
 
 		 214 aa  129  3e-29  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  36.89 
 
 		 214 aa  129  4.0000000000000003e-29  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0203352 
 
 
-
 
NC_013132  Cpin_5915  two component transcriptional regulator, LuxR family  34.13 
 
 		 207 aa  127  9.000000000000001e-29  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00974735  normal  1 
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  36.41 
 
 		 214 aa  127  1.0000000000000001e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  1  hitchhiker  0.00509748 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  36.41 
 
 		 213 aa  126  2.0000000000000002e-28  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  32.69 
 
 		 217 aa  126  3e-28  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  29.67 
 
 		 212 aa  126  3e-28  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  34.95 
 
 		 213 aa  126  3e-28  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.53826 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  29.91 
 
 		 229 aa  125  4.0000000000000003e-28  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  35.89 
 
 		 214 aa  125  5e-28  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  33.65 
 
 		 215 aa  124  8.000000000000001e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  33.96 
 
 		 213 aa  124  8.000000000000001e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  32.86 
 
 		 231 aa  124  1e-27  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  33.17 
 
 		 220 aa  124  1e-27  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.65 
 
 		 215 aa  124  1e-27  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  30.48 
 
 		 216 aa  123  2e-27  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  31.73 
 
 		 218 aa  123  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  32.39 
 
 		 219 aa  123  2e-27  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  36.02 
 
 		 214 aa  122  3e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.10411 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  31.48 
 
 		 213 aa  122  3e-27  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008609  Ppro_2713  two component LuxR family transcriptional regulator  33.33 
 
 		 208 aa  122  4e-27  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  30.48 
 
 		 215 aa  122  5e-27  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  31.65 
 
 		 220 aa  121  6e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_013501  Rmar_1122  two component transcriptional regulator, LuxR family  33.49 
 
 		 234 aa  121  7e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  0.752968  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  33.81 
 
 		 214 aa  121  8e-27  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_014158  Tpau_1410  two component transcriptional regulator, LuxR family  31.8 
 
 		 222 aa  120  9.999999999999999e-27  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.46664  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  30.66 
 
 		 221 aa  120  9.999999999999999e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  32.24 
 
 		 215 aa  120  9.999999999999999e-27  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  33.97 
 
 		 215 aa  120  9.999999999999999e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  32.24 
 
 		 215 aa  120  9.999999999999999e-27  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  32.24 
 
 		 215 aa  120  9.999999999999999e-27  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  32.06 
 
 		 216 aa  120  1.9999999999999998e-26  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  34.76 
 
 		 230 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.683214 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  33.33 
 
 		 228 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  33.49 
 
 		 208 aa  120  1.9999999999999998e-26  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  32.35 
 
 		 219 aa  120  1.9999999999999998e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  33.18 
 
 		 215 aa  119  3.9999999999999996e-26  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  32.54 
 
 		 228 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  28.71 
 
 		 221 aa  119  4.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_1551  two component LuxR family transcriptional regulator  32.69 
 
 		 229 aa  118  4.9999999999999996e-26  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.460798 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  35.12 
 
 		 208 aa  119  4.9999999999999996e-26  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  31.13 
 
 		 216 aa  118  6e-26  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_1643  two component LuxR family transcriptional regulator  31.94 
 
 		 219 aa  118  6e-26  Pseudomonas putida W619  Bacteria  normal  0.118638  normal  1 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  32.55 
 
 		 242 aa  118  6e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B5451  two component LuxR family transcriptional regulator  32.09 
 
 		 223 aa  118  7e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.761649  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  32.69 
 
 		 216 aa  118  7e-26  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  31.02 
 
 		 232 aa  118  7.999999999999999e-26  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  31.1 
 
 		 228 aa  118  7.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  30.58 
 
 		 213 aa  117  9.999999999999999e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  29.19 
 
 		 218 aa  117  9.999999999999999e-26  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  31.73 
 
 		 217 aa  117  9.999999999999999e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  31.4 
 
 		 214 aa  117  9.999999999999999e-26  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal  1 
 
 
-
 
NC_010338  Caul_2685  two component LuxR family transcriptional regulator  29.67 
 
 		 222 aa  117  9.999999999999999e-26  Caulobacter sp. K31  Bacteria  normal  0.120511  normal  1 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  34.76 
 
 		 230 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0808908 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  32.86 
 
 		 218 aa  117  9.999999999999999e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  33.01 
 
 		 274 aa  117  9.999999999999999e-26  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  30.66 
 
 		 223 aa  117  9.999999999999999e-26  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  28.64 
 
 		 214 aa  117  9.999999999999999e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_002947  PP_2126  LuxR family DNA-binding response regulator  31.65 
 
 		 219 aa  117  1.9999999999999998e-25  Pseudomonas putida KT2440  Bacteria  normal  0.118459  normal  0.107719 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  33.33 
 
 		 213 aa  116  1.9999999999999998e-25  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  30.7 
 
 		 232 aa  116  1.9999999999999998e-25  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_3615  two component LuxR family transcriptional regulator  31.65 
 
 		 219 aa  116  1.9999999999999998e-25  Pseudomonas putida F1  Bacteria  normal  0.378192  normal  0.274637 
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  33.33 
 
 		 213 aa  116  1.9999999999999998e-25  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_007952  Bxe_B0788  two component LuxR family transcriptional regulator  34.78 
 
 		 218 aa  117  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.3296  normal  1 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  31.16 
 
 		 232 aa  116  1.9999999999999998e-25  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  31.88 
 
 		 206 aa  116  1.9999999999999998e-25  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  29.95 
 
 		 228 aa  116  1.9999999999999998e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  32.52 
 
 		 210 aa  117  1.9999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.458284 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  30.99 
 
 		 216 aa  117  1.9999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  30 
 
 		 236 aa  115  3e-25  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  30.84 
 
 		 212 aa  116  3e-25  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  30 
 
 		 236 aa  115  3e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal  1 
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  30 
 
 		 236 aa  116  3e-25  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.142587 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  31.34 
 
 		 217 aa  115  3.9999999999999997e-25  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_010676  Bphyt_4476  two component transcriptional regulator, LuxR family  34.3 
 
 		 215 aa  115  5e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  31.88 
 
 		 215 aa  115  5e-25  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  32.69 
 
 		 210 aa  115  5e-25  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal  1 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  32.04 
 
 		 213 aa  115  6e-25  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  30.73 
 
 		 219 aa  115  6e-25  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.869411 
 
 
-
 
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