More than 300 homologs were found in PanDaTox collection
for query gene CA2559_08151 on replicon NC_014230
Organism: Croceibacter atlanticus HTCC2559



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009441  Fjoh_2906  response regulator receiver protein  70.66 
 
 
517 aa  773    Flavobacterium johnsoniae UW101  Bacteria  normal  0.568683  n/a   
 
 
-
 
NC_014230  CA2559_08151  response regulator  100 
 
 
516 aa  1072    Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5047  response regulator receiver protein  56.05 
 
 
521 aa  599  1e-170  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_4282  PglZ domain protein  54.35 
 
 
518 aa  599  1e-170  Pedobacter heparinus DSM 2366  Bacteria  normal  0.769544  normal 
 
 
-
 
NC_013730  Slin_3042  response regulator receiver protein  56.38 
 
 
524 aa  597  1e-169  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0742856 
 
 
-
 
NC_008255  CHU_1040  two-component response regulator  53.77 
 
 
518 aa  581  1.0000000000000001e-165  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.429651  normal 
 
 
-
 
NC_013132  Cpin_1282  response regulator receiver protein  51.65 
 
 
517 aa  564  1.0000000000000001e-159  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00300616  normal 
 
 
-
 
NC_002950  PG0928  response regulator  52.9 
 
 
518 aa  531  1e-149  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.581359 
 
 
-
 
NC_013501  Rmar_2518  response regulator receiver protein  41.78 
 
 
519 aa  445  1.0000000000000001e-124  Rhodothermus marinus DSM 4252  Bacteria  normal  0.487815  n/a   
 
 
-
 
NC_002939  GSU2693  response regulator  37.93 
 
 
128 aa  83.2  0.00000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1309  multi-sensor signal transduction histidine kinase  36.44 
 
 
472 aa  82.8  0.00000000000001  Methanospirillum hungatei JF-1  Archaea  normal  0.974547  normal  0.0144544 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  37.8 
 
 
470 aa  81.6  0.00000000000003  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  37.01 
 
 
470 aa  80.5  0.00000000000006  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
469 aa  80.5  0.00000000000006  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_007517  Gmet_0010  PAS/PAC sensor hybrid histidine kinase  33.1 
 
 
508 aa  79.3  0.0000000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.0502065  normal 
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  33.82 
 
 
469 aa  79.3  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  32.26 
 
 
483 aa  79.3  0.0000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_012918  GM21_0009  multi-sensor signal transduction histidine kinase  29.09 
 
 
509 aa  79.3  0.0000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.923259 
 
 
-
 
NC_007404  Tbd_0085  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.15 
 
 
738 aa  79.3  0.0000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.127866 
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  37.4 
 
 
238 aa  79  0.0000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  34.75 
 
 
243 aa  78.6  0.0000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_012793  GWCH70_2219  two component transcriptional regulator, winged helix family  33.61 
 
 
240 aa  78.2  0.0000000000004  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  32.19 
 
 
474 aa  77.8  0.0000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  33.06 
 
 
487 aa  77.8  0.0000000000005  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  37.7 
 
 
476 aa  77.4  0.0000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_013173  Dbac_1833  two component, sigma54 specific, transcriptional regulator, Fis family  35.43 
 
 
460 aa  76.6  0.0000000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.248577  n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  33.9 
 
 
234 aa  76.6  0.0000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_003909  BCE_1601  DNA-binding response regulator ResD  33.88 
 
 
250 aa  76.3  0.000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  0.953648  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  33.05 
 
 
234 aa  76.3  0.000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013158  Huta_0330  multi-sensor signal transduction histidine kinase  29.38 
 
 
758 aa  76.3  0.000000000001  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_005945  BAS1386  DNA-binding response regulator ResD  33.88 
 
 
238 aa  75.9  0.000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1359  response regulator  33.88 
 
 
238 aa  75.9  0.000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0319788  n/a   
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  34.4 
 
 
446 aa  76.3  0.000000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK1358  response regulator  33.88 
 
 
238 aa  75.9  0.000000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1637  DNA-binding response regulator ResD  33.88 
 
 
250 aa  76.3  0.000000000001  Bacillus cereus AH187  Bacteria  normal  0.0246031  n/a   
 
 
-
 
NC_007530  GBAA_1497  DNA-binding response regulator ResD  33.88 
 
 
238 aa  75.9  0.000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.862661  n/a   
 
 
-
 
NC_011773  BCAH820_1569  DNA-binding response regulator ResD  33.88 
 
 
250 aa  76.3  0.000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.45334e-32 
 
 
-
 
NC_007912  Sde_2724  response regulator receiver domain-containing protein  32.69 
 
 
230 aa  76.3  0.000000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.480114  normal 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  32.59 
 
 
446 aa  75.5  0.000000000002  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  34.96 
 
 
502 aa  75.5  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  33.88 
 
 
238 aa  75.5  0.000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
NC_011772  BCG9842_B3814  DNA-binding response regulator ResD  33.06 
 
 
238 aa  75.1  0.000000000003  Bacillus cereus G9842  Bacteria  normal  hitchhiker  3.95849e-16 
 
 
-
 
NC_011725  BCB4264_A1531  DNA-binding response regulator ResD  33.06 
 
 
238 aa  75.1  0.000000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1760  response regulator receiver modulated diguanylate cyclase  29.87 
 
 
473 aa  75.1  0.000000000003  Geobacter lovleyi SZ  Bacteria  normal  0.554911  n/a   
 
 
-
 
NC_013552  DhcVS_1406  response regulator  38.21 
 
 
351 aa  74.7  0.000000000003  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0010  multi-sensor signal transduction histidine kinase  28.48 
 
 
511 aa  74.3  0.000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4270  response regulator receiver modulated metal dependent phosphohydrolase  34.31 
 
 
361 aa  73.9  0.000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  35.94 
 
 
151 aa  73.9  0.000000000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0173  response regulator receiver protein  34.71 
 
 
121 aa  74.3  0.000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  28.66 
 
 
442 aa  73.9  0.000000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_009712  Mboo_2110  multi-sensor signal transduction histidine kinase  34.01 
 
 
789 aa  73.6  0.000000000007  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.377648  normal 
 
 
-
 
NC_009943  Dole_2811  multi-sensor signal transduction histidine kinase  31.5 
 
 
498 aa  73.6  0.000000000008  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.782124  n/a   
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  30.88 
 
 
441 aa  73.6  0.000000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1522  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
461 aa  73.6  0.000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0008  sensory box histidine kinase/response regulator  31.47 
 
 
516 aa  72.8  0.00000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  35.34 
 
 
472 aa  73.2  0.00000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  32.5 
 
 
461 aa  72.8  0.00000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  28.67 
 
 
391 aa  72.8  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_1415  multi-sensor signal transduction histidine kinase  30.87 
 
 
2072 aa  72.8  0.00000000001  Methanospirillum hungatei JF-1  Archaea  normal  0.384608  normal  0.53452 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  33.33 
 
 
219 aa  73.2  0.00000000001  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
467 aa  72.4  0.00000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  33.33 
 
 
447 aa  72  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  32.2 
 
 
240 aa  72.8  0.00000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  32.52 
 
 
447 aa  72.8  0.00000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  30.88 
 
 
441 aa  71.6  0.00000000003  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  30.88 
 
 
441 aa  71.6  0.00000000003  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  30.88 
 
 
441 aa  71.6  0.00000000003  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  30.88 
 
 
441 aa  71.6  0.00000000003  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  35.71 
 
 
470 aa  72  0.00000000003  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  32.2 
 
 
537 aa  71.6  0.00000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1792  multi-sensor signal transduction histidine kinase  31.43 
 
 
984 aa  71.6  0.00000000003  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  30.88 
 
 
441 aa  71.6  0.00000000003  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
NC_011832  Mpal_1293  putative PAS/PAC sensor protein  39.05 
 
 
1265 aa  71.6  0.00000000003  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.307468 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  30.88 
 
 
441 aa  71.6  0.00000000003  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_009634  Mevan_0614  response regulator receiver protein  38.46 
 
 
121 aa  71.6  0.00000000003  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  30.88 
 
 
441 aa  71.6  0.00000000003  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  30.95 
 
 
450 aa  71.6  0.00000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  30.88 
 
 
441 aa  71.6  0.00000000003  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  29.49 
 
 
448 aa  71.6  0.00000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  34.68 
 
 
451 aa  71.6  0.00000000003  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_008639  Cpha266_1834  multi-sensor signal transduction histidine kinase  32.77 
 
 
681 aa  71.6  0.00000000003  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
461 aa  71.2  0.00000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  35.65 
 
 
391 aa  71.2  0.00000000004  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_011769  DvMF_2550  multi-sensor signal transduction histidine kinase  29.86 
 
 
685 aa  71.6  0.00000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_004116  SAG0393  DNA-binding response regulator  33.62 
 
 
228 aa  71.2  0.00000000004  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.632289  n/a   
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  33.33 
 
 
230 aa  71.2  0.00000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1340  two component, sigma54 specific, Fis family transcriptional regulator  33.91 
 
 
457 aa  71.2  0.00000000004  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  35.29 
 
 
157 aa  71.2  0.00000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_00330  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  29.45 
 
 
240 aa  70.9  0.00000000005  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.00972196  normal 
 
 
-
 
NC_002939  GSU1879  DNA-binding response regulator  30.51 
 
 
238 aa  70.9  0.00000000005  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000557668  n/a   
 
 
-
 
NC_011769  DvMF_1360  two component, sigma54 specific, transcriptional regulator, Fis family  33.6 
 
 
525 aa  70.9  0.00000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_1450  two component, sigma54 specific, Fis family transcriptional regulator  30.57 
 
 
448 aa  70.9  0.00000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  31.33 
 
 
236 aa  70.5  0.00000000006  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  29.8 
 
 
941 aa  70.9  0.00000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1832  two component, sigma54 specific, transcriptional regulator, Fis family  33.6 
 
 
453 aa  70.5  0.00000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.475571  n/a   
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  31.65 
 
 
471 aa  70.9  0.00000000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2835  two component, sigma54 specific, transcriptional regulator, Fis family  30.77 
 
 
475 aa  70.5  0.00000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.019348  n/a   
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  33.6 
 
 
460 aa  70.5  0.00000000007  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2720  multi-sensor signal transduction histidine kinase  32.74 
 
 
657 aa  70.5  0.00000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.312815 
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  35.19 
 
 
485 aa  70.5  0.00000000008  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
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