More than 300 homologs were found in PanDaTox collection
for query gene Slin_3042 on replicon NC_013730
Organism: Spirosoma linguale DSM 74



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_3042  response regulator receiver protein  100 
 
 
524 aa  1087    Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0742856 
 
 
-
 
NC_013061  Phep_4282  PglZ domain protein  57.88 
 
 
518 aa  635    Pedobacter heparinus DSM 2366  Bacteria  normal  0.769544  normal 
 
 
-
 
NC_013037  Dfer_5047  response regulator receiver protein  75.95 
 
 
521 aa  851    Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1040  two-component response regulator  59.66 
 
 
518 aa  660    Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.429651  normal 
 
 
-
 
NC_014230  CA2559_08151  response regulator  56.38 
 
 
516 aa  627  1e-178  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2906  response regulator receiver protein  54.2 
 
 
517 aa  592  1e-168  Flavobacterium johnsoniae UW101  Bacteria  normal  0.568683  n/a   
 
 
-
 
NC_013132  Cpin_1282  response regulator receiver protein  52.86 
 
 
517 aa  591  1e-167  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00300616  normal 
 
 
-
 
NC_002950  PG0928  response regulator  52.29 
 
 
518 aa  538  9.999999999999999e-153  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.581359 
 
 
-
 
NC_013501  Rmar_2518  response regulator receiver protein  45.77 
 
 
519 aa  499  1e-140  Rhodothermus marinus DSM 4252  Bacteria  normal  0.487815  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  35.43 
 
 
470 aa  85.1  0.000000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  34.65 
 
 
470 aa  85.1  0.000000000000003  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  34.53 
 
 
474 aa  84.7  0.000000000000004  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_002939  GSU2693  response regulator  36.21 
 
 
128 aa  83.6  0.000000000000008  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1042  two component signal transduction response regulator  24.03 
 
 
465 aa  83.6  0.000000000000008  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.472622  n/a   
 
 
-
 
NC_007796  Mhun_1309  multi-sensor signal transduction histidine kinase  39.81 
 
 
472 aa  83.6  0.000000000000009  Methanospirillum hungatei JF-1  Archaea  normal  0.974547  normal  0.0144544 
 
 
-
 
NC_008009  Acid345_4562  two component transcriptional regulator  35.04 
 
 
247 aa  82.4  0.00000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.488322  normal  0.0982939 
 
 
-
 
NC_010184  BcerKBAB4_0499  two component transcriptional regulator  35.96 
 
 
223 aa  81.3  0.00000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  33.61 
 
 
391 aa  81.3  0.00000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
487 aa  80.9  0.00000000000005  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_011658  BCAH187_A0711  DNA-binding response regulator  36.84 
 
 
223 aa  80.5  0.00000000000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1988  response regulator receiver protein  38.18 
 
 
119 aa  80.9  0.00000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU1658  response regulator/GGDEF domain-containing protein  32.79 
 
 
458 aa  80.9  0.00000000000006  Geobacter sulfurreducens PCA  Bacteria  normal  0.939598  n/a   
 
 
-
 
NC_003909  BCE_0650  DNA-binding response regulator  36.84 
 
 
223 aa  80.5  0.00000000000006  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0554  DNA-binding response regulator  35.96 
 
 
223 aa  80.5  0.00000000000007  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0496  response regulator  35.96 
 
 
223 aa  80.5  0.00000000000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0498  response regulator  35.96 
 
 
223 aa  80.5  0.00000000000007  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0641  DNA-binding response regulator  35.96 
 
 
223 aa  80.5  0.00000000000007  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0585  DNA-binding response regulator  35.96 
 
 
223 aa  80.5  0.00000000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1554  two component transcriptional regulator, winged helix family  32.64 
 
 
229 aa  80.1  0.00000000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00709514 
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  35.09 
 
 
234 aa  80.1  0.00000000000008  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  35.09 
 
 
243 aa  79.3  0.0000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  34.21 
 
 
234 aa  79.7  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B4716  DNA-binding response regulator  35.96 
 
 
223 aa  79.7  0.0000000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0010  multi-sensor signal transduction histidine kinase  32.12 
 
 
511 aa  79.7  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0623  DNA-binding response regulator  35.96 
 
 
223 aa  79.7  0.0000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  30.13 
 
 
469 aa  79.7  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  30.3 
 
 
157 aa  79.3  0.0000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_1491  PglZ domain protein  22.89 
 
 
668 aa  80.1  0.0000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0684  two component, sigma54 specific, Fis family transcriptional regulator  32.28 
 
 
456 aa  78.6  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  33.61 
 
 
450 aa  79.3  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  29.38 
 
 
448 aa  78.6  0.0000000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0009  multi-sensor signal transduction histidine kinase  31.52 
 
 
509 aa  78.2  0.0000000000003  Geobacter sp. M21  Bacteria  n/a    normal  0.923259 
 
 
-
 
NC_009674  Bcer98_0503  two component transcriptional regulator  34.78 
 
 
223 aa  77.8  0.0000000000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  36.22 
 
 
391 aa  77.4  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1124  PglZ domain protein  22.31 
 
 
677 aa  77.4  0.0000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.0434385 
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  32.81 
 
 
151 aa  77  0.0000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2223  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.1 
 
 
725 aa  77  0.0000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  0.847933  n/a   
 
 
-
 
NC_007604  Synpcc7942_1815  response regulator receiver domain-containing protein  38.46 
 
 
411 aa  76.6  0.0000000000009  Synechococcus elongatus PCC 7942  Bacteria  normal  0.800608  normal  0.49797 
 
 
-
 
NC_002939  GSU0008  sensory box histidine kinase/response regulator  30.06 
 
 
516 aa  76.6  0.000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1380  response regulator receiver modulated diguanylate cyclase  27.17 
 
 
454 aa  76.3  0.000000000001  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00781234  n/a   
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  28.66 
 
 
469 aa  76.3  0.000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  33.86 
 
 
441 aa  76.3  0.000000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  34.13 
 
 
451 aa  76.3  0.000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_007517  Gmet_0010  PAS/PAC sensor hybrid histidine kinase  33.1 
 
 
508 aa  76.3  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.0502065  normal 
 
 
-
 
NC_009972  Haur_1267  response regulator receiver sensor signal transduction histidine kinase  24.12 
 
 
542 aa  76.3  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4134  two component, sigma54 specific, Fis family transcriptional regulator  30 
 
 
503 aa  76.6  0.000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.518236  normal  0.980065 
 
 
-
 
NC_002939  GSU0842  sensory box histidine kinase/response regulator  31.97 
 
 
787 aa  75.5  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.220519  n/a   
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  31.71 
 
 
230 aa  75.5  0.000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2940  two component, sigma54 specific, Fis family transcriptional regulator  30.65 
 
 
500 aa  75.5  0.000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_2393  response regulator receiver modulated diguanylate cyclase  35.48 
 
 
455 aa  75.9  0.000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.502232  n/a   
 
 
-
 
NC_011891  A2cp1_0673  two component, sigma54 specific, transcriptional regulator, Fis family  29.94 
 
 
458 aa  75.5  0.000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0673  two component, sigma54 specific, transcriptional regulator, Fis family  29.94 
 
 
457 aa  75.5  0.000000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1488  two component, sigma54 specific, Fis family transcriptional regulator  31.15 
 
 
464 aa  75.5  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.781886  normal  0.688737 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  34.56 
 
 
476 aa  75.9  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  35.9 
 
 
441 aa  74.7  0.000000000003  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  30.77 
 
 
228 aa  74.7  0.000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  35.9 
 
 
441 aa  74.7  0.000000000003  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  35.9 
 
 
441 aa  74.7  0.000000000003  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_012793  GWCH70_1656  response regulator receiver protein  32.06 
 
 
166 aa  75.1  0.000000000003  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1471  response regulator receiver modulated diguanylate cyclase  34.68 
 
 
455 aa  74.7  0.000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1914  response regulator receiver modulated diguanylate cyclase  31.97 
 
 
459 aa  75.1  0.000000000003  Geobacter metallireducens GS-15  Bacteria  normal  0.943888  hitchhiker  0.00021307 
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  35.9 
 
 
441 aa  74.7  0.000000000003  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  31.34 
 
 
941 aa  75.1  0.000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  35.9 
 
 
441 aa  74.7  0.000000000003  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  35.9 
 
 
441 aa  75.1  0.000000000003  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  30.77 
 
 
228 aa  75.1  0.000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2016  two component, sigma54 specific, Fis family transcriptional regulator  32.52 
 
 
493 aa  75.1  0.000000000003  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00000590429 
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  35.9 
 
 
441 aa  74.7  0.000000000004  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_011891  A2cp1_1566  response regulator receiver modulated diguanylate cyclase  34.68 
 
 
455 aa  74.7  0.000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.355183  n/a   
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  35.9 
 
 
441 aa  74.7  0.000000000004  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_012793  GWCH70_2219  two component transcriptional regulator, winged helix family  31.36 
 
 
240 aa  74.7  0.000000000004  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  35.34 
 
 
444 aa  74.7  0.000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3674  two component transcriptional regulator  30.88 
 
 
246 aa  74.3  0.000000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.027909  normal 
 
 
-
 
NC_011830  Dhaf_1740  two component transcriptional regulator, winged helix family  31.01 
 
 
225 aa  74.3  0.000000000005  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000204942  n/a   
 
 
-
 
NC_011832  Mpal_1293  putative PAS/PAC sensor protein  37.96 
 
 
1265 aa  73.9  0.000000000006  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.307468 
 
 
-
 
NC_003910  CPS_1426  transcriptional regulatory protein RstA  31.54 
 
 
248 aa  73.9  0.000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  0.319576  n/a   
 
 
-
 
NC_010002  Daci_3145  two component transcriptional regulator  34.15 
 
 
231 aa  73.9  0.000000000006  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00258001  hitchhiker  0.000377263 
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  32.14 
 
 
471 aa  73.9  0.000000000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  32.46 
 
 
240 aa  74.3  0.000000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_012918  GM21_1811  response regulator receiver modulated metal dependent phosphohydrolase  34.33 
 
 
347 aa  73.9  0.000000000006  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00843757 
 
 
-
 
NC_009674  Bcer98_1021  two component transcriptional regulator  30.25 
 
 
223 aa  73.9  0.000000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0639  two component, sigma54 specific, Fis family transcriptional regulator  29.3 
 
 
455 aa  73.9  0.000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  27.42 
 
 
452 aa  73.9  0.000000000006  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2407  response regulator receiver modulated metal dependent phosphohydrolase  34.33 
 
 
347 aa  73.9  0.000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  0.21688  n/a   
 
 
-
 
NC_009784  VIBHAR_06763  transcriptional regulatory protein CpxR  32.14 
 
 
221 aa  73.9  0.000000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  31.09 
 
 
223 aa  73.9  0.000000000007  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1662  response regulator receiver sensor signal transduction histidine kinase  35.82 
 
 
396 aa  73.9  0.000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  31.09 
 
 
223 aa  73.9  0.000000000007  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0417  two component, sigma54 specific, Fis family transcriptional regulator  30.6 
 
 
474 aa  73.6  0.000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.45134  n/a   
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  34.48 
 
 
444 aa  73.6  0.000000000008  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>