More than 300 homologs were found in PanDaTox collection
for query gene PG0928 on replicon NC_002950
Organism: Porphyromonas gingivalis W83



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002950  PG0928  response regulator  100 
 
 
518 aa  1071    Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.581359 
 
 
-
 
NC_013061  Phep_4282  PglZ domain protein  55.95 
 
 
518 aa  588  1e-167  Pedobacter heparinus DSM 2366  Bacteria  normal  0.769544  normal 
 
 
-
 
NC_013037  Dfer_5047  response regulator receiver protein  53.95 
 
 
521 aa  571  1e-161  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_08151  response regulator  52.9 
 
 
516 aa  564  1.0000000000000001e-159  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2906  response regulator receiver protein  51.26 
 
 
517 aa  548  1e-154  Flavobacterium johnsoniae UW101  Bacteria  normal  0.568683  n/a   
 
 
-
 
NC_008255  CHU_1040  two-component response regulator  49.71 
 
 
518 aa  540  9.999999999999999e-153  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.429651  normal 
 
 
-
 
NC_013730  Slin_3042  response regulator receiver protein  52.29 
 
 
524 aa  538  1e-151  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0742856 
 
 
-
 
NC_013132  Cpin_1282  response regulator receiver protein  47.97 
 
 
517 aa  518  1e-146  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00300616  normal 
 
 
-
 
NC_013501  Rmar_2518  response regulator receiver protein  45.7 
 
 
519 aa  498  1e-140  Rhodothermus marinus DSM 4252  Bacteria  normal  0.487815  n/a   
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  36.29 
 
 
450 aa  85.9  0.000000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  35.59 
 
 
234 aa  85.1  0.000000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  34.75 
 
 
234 aa  84.7  0.000000000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  32.32 
 
 
470 aa  81.6  0.00000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  34.75 
 
 
243 aa  80.9  0.00000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  32.93 
 
 
470 aa  80.9  0.00000000000006  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_007498  Pcar_1042  two component signal transduction response regulator  29.41 
 
 
465 aa  80.5  0.00000000000007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.472622  n/a   
 
 
-
 
NC_013522  Taci_1491  PglZ domain protein  23.45 
 
 
668 aa  79.7  0.0000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0817  hypothetical protein  26.27 
 
 
677 aa  79.7  0.0000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.062184  normal  0.168506 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  33.33 
 
 
221 aa  78.6  0.0000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  39.06 
 
 
463 aa  78.6  0.0000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_010655  Amuc_1728  two component transcriptional regulator, winged helix family  34.75 
 
 
234 aa  77.4  0.0000000000006  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.541096  normal 
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  34.48 
 
 
469 aa  76.3  0.000000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  34.48 
 
 
469 aa  75.9  0.000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  29.13 
 
 
236 aa  75.1  0.000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1760  response regulator receiver modulated diguanylate cyclase  25.93 
 
 
473 aa  74.7  0.000000000004  Geobacter lovleyi SZ  Bacteria  normal  0.554911  n/a   
 
 
-
 
NC_012793  GWCH70_2219  two component transcriptional regulator, winged helix family  30.47 
 
 
240 aa  74.7  0.000000000004  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  32.3 
 
 
448 aa  74.7  0.000000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1380  response regulator receiver modulated diguanylate cyclase  28.89 
 
 
454 aa  73.9  0.000000000006  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00781234  n/a   
 
 
-
 
NC_013411  GYMC61_0402  two component transcriptional regulator, winged helix family  31.67 
 
 
241 aa  73.6  0.000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_1991  response regulator receiver modulated metal dependent phosphohydrolase  29.29 
 
 
357 aa  73.6  0.000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2918  two component transcriptional regulator, winged helix family  27.13 
 
 
232 aa  73.9  0.000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  32.09 
 
 
466 aa  72.8  0.00000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_009439  Pmen_0176  two-component response regulator AlgB  33.06 
 
 
450 aa  72.4  0.00000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_0018  two component, sigma54 specific, transcriptional regulator, Fis family  31.25 
 
 
461 aa  72  0.00000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.709029  normal  0.924426 
 
 
-
 
NC_004578  PSPTO_0334  alginate biosynthesis transcriptional regulatory protein AlgB  34.78 
 
 
448 aa  72  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.368066  n/a   
 
 
-
 
NC_007005  Psyr_0263  helix-turn-helix, Fis-type  34.78 
 
 
448 aa  72  0.00000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2223  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  30.65 
 
 
725 aa  72  0.00000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.847933  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  29.66 
 
 
240 aa  72.4  0.00000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_012560  Avin_11120  Response regulator, sigma54-dependent regulatory protein; AlgB  30.2 
 
 
448 aa  72.4  0.00000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  31.4 
 
 
151 aa  72.4  0.00000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2693  response regulator  36.04 
 
 
128 aa  71.6  0.00000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  33.64 
 
 
444 aa  71.6  0.00000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010322  PputGB1_0148  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
448 aa  72  0.00000000003  Pseudomonas putida GB-1  Bacteria  normal  normal  0.837927 
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  34.58 
 
 
444 aa  71.6  0.00000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_5095  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
448 aa  71.6  0.00000000003  Pseudomonas putida W619  Bacteria  normal  normal  0.262214 
 
 
-
 
NC_007492  Pfl01_0046  two-component response regulator AlgB  34.78 
 
 
448 aa  71.6  0.00000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.384971 
 
 
-
 
NC_009943  Dole_1649  two component, sigma54 specific, Fis family transcriptional regulator  31.88 
 
 
479 aa  71.6  0.00000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3744  putative GAF sensor protein  28.05 
 
 
323 aa  72  0.00000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0133  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
448 aa  71.6  0.00000000004  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1988  response regulator receiver protein  34.55 
 
 
119 aa  71.2  0.00000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009441  Fjoh_3924  response regulator receiver protein  33.62 
 
 
121 aa  71.2  0.00000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.405001  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  30.33 
 
 
453 aa  71.2  0.00000000004  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_008609  Ppro_3046  response regulator receiver modulated metal dependent phosphohydrolase  30.37 
 
 
365 aa  71.6  0.00000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0429754  n/a   
 
 
-
 
NC_009512  Pput_0150  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
448 aa  71.6  0.00000000004  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  30 
 
 
476 aa  71.2  0.00000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_011658  BCAH187_A1637  DNA-binding response regulator ResD  31.03 
 
 
250 aa  70.9  0.00000000005  Bacillus cereus AH187  Bacteria  normal  0.0246031  n/a   
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  30.51 
 
 
235 aa  70.9  0.00000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1891  response regulator  28.97 
 
 
379 aa  70.9  0.00000000005  Geobacter sulfurreducens PCA  Bacteria  normal  0.750204  n/a   
 
 
-
 
NC_003909  BCE_1601  DNA-binding response regulator ResD  31.03 
 
 
250 aa  70.9  0.00000000005  Bacillus cereus ATCC 10987  Bacteria  normal  0.953648  n/a   
 
 
-
 
NC_011773  BCAH820_1569  DNA-binding response regulator ResD  31.03 
 
 
250 aa  70.9  0.00000000005  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.45334e-32 
 
 
-
 
NC_007517  Gmet_1919  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  30.89 
 
 
350 aa  71.2  0.00000000005  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.179225 
 
 
-
 
NC_010506  Swoo_0970  two component LuxR family transcriptional regulator  34.35 
 
 
209 aa  71.2  0.00000000005  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0307407  normal 
 
 
-
 
NC_013730  Slin_0751  two component, sigma54 specific, transcriptional regulator, Fis family  29.66 
 
 
490 aa  70.9  0.00000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.664159  normal 
 
 
-
 
NC_007912  Sde_2724  response regulator receiver domain-containing protein  29.9 
 
 
230 aa  71.2  0.00000000005  Saccharophagus degradans 2-40  Bacteria  normal  0.480114  normal 
 
 
-
 
NC_013132  Cpin_4715  two component, sigma54 specific, transcriptional regulator, Fis family  32 
 
 
466 aa  71.2  0.00000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.112239  normal  0.0159313 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  29.51 
 
 
459 aa  70.9  0.00000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  31.9 
 
 
238 aa  70.9  0.00000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  30 
 
 
471 aa  70.9  0.00000000006  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_011769  DvMF_2550  multi-sensor signal transduction histidine kinase  31.67 
 
 
685 aa  70.5  0.00000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  30.82 
 
 
474 aa  70.9  0.00000000006  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_007958  RPD_2428  signal transduction histidine kinase  36 
 
 
360 aa  70.5  0.00000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.391955  decreased coverage  0.00462713 
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  32.76 
 
 
238 aa  70.9  0.00000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1386  DNA-binding response regulator ResD  31.03 
 
 
238 aa  70.5  0.00000000007  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1359  response regulator  31.03 
 
 
238 aa  70.5  0.00000000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0319788  n/a   
 
 
-
 
NC_006274  BCZK1358  response regulator  31.03 
 
 
238 aa  70.5  0.00000000007  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1497  DNA-binding response regulator ResD  31.03 
 
 
238 aa  70.5  0.00000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.862661  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  32.23 
 
 
472 aa  70.5  0.00000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3814  DNA-binding response regulator ResD  31.03 
 
 
238 aa  70.5  0.00000000008  Bacillus cereus G9842  Bacteria  normal  hitchhiker  3.95849e-16 
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  32.39 
 
 
460 aa  70.5  0.00000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0916  two component transcriptional regulator, winged helix family  35.43 
 
 
234 aa  70.5  0.00000000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0276045  hitchhiker  9.727110000000001e-18 
 
 
-
 
NC_011725  BCB4264_A1531  DNA-binding response regulator ResD  31.03 
 
 
238 aa  70.5  0.00000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0925  two component, sigma54 specific, transcriptional regulator, Fis family  36.07 
 
 
484 aa  70.1  0.00000000008  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.815173  normal 
 
 
-
 
NC_011898  Ccel_0246  two component transcriptional regulator, winged helix family  27.33 
 
 
225 aa  70.1  0.00000000009  Clostridium cellulolyticum H10  Bacteria  normal  0.0272164  n/a   
 
 
-
 
NC_009712  Mboo_2110  multi-sensor signal transduction histidine kinase  35.04 
 
 
789 aa  70.1  0.00000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.377648  normal 
 
 
-
 
NC_008228  Patl_2301  two component transcriptional regulator  34.01 
 
 
244 aa  70.1  0.00000000009  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00025805  n/a   
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  26 
 
 
485 aa  69.7  0.0000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1879  DNA-binding response regulator  28.81 
 
 
238 aa  70.1  0.0000000001  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000557668  n/a   
 
 
-
 
NC_011146  Gbem_2407  response regulator receiver modulated metal dependent phosphohydrolase  31.85 
 
 
347 aa  70.1  0.0000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.21688  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  33.85 
 
 
226 aa  69.7  0.0000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  28.38 
 
 
391 aa  69.7  0.0000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2145  two component, sigma54 specific, Fis family transcriptional regulator  35.51 
 
 
446 aa  69.7  0.0000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1260  two component, sigma54 specific, transcriptional regulator, Fis family  32.48 
 
 
452 aa  69.7  0.0000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.0000000000141339 
 
 
-
 
NC_012918  GM21_1811  response regulator receiver modulated metal dependent phosphohydrolase  31.85 
 
 
347 aa  70.1  0.0000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00843757 
 
 
-
 
NC_009901  Spea_0829  two component LuxR family transcriptional regulator  31.21 
 
 
209 aa  69.7  0.0000000001  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00236991  n/a   
 
 
-
 
NC_008009  Acid345_4562  two component transcriptional regulator  30.25 
 
 
247 aa  70.1  0.0000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.488322  normal  0.0982939 
 
 
-
 
NC_011146  Gbem_1522  two component, sigma54 specific, transcriptional regulator, Fis family  32.5 
 
 
461 aa  69.7  0.0000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_72380  two-component response regulator AlgB  33.04 
 
 
449 aa  69.7  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.415261  normal 
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  32.5 
 
 
461 aa  69.7  0.0000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_008554  Sfum_0827  two component, sigma54 specific, Fis family transcriptional regulator  32.8 
 
 
447 aa  69.3  0.0000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6282  two-component response regulator AlgB  33.04 
 
 
449 aa  69.7  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
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