| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1728 |
|---|
| Symbol | |
|---|
| ID | 6274428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2110233 |
|---|
| End bp | 2110937 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642613791 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_001878327 |
|---|
| Protein GI | 187736215 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.541096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATT CAGCCTATAC CATTCTGATT GCGGAGGACG ACGACAGCAT CAGGCATGCC
CTGACGGACG TTCTGACCGC ATCCGGCTAC GAAGTGCTGG CTCTGGAAGA AGGCCTGGCC
GCCATCCATG CCGTGCGGGA ACGCAATTTC GACCTCGCCC TGCTGGACGT GGCCATGCCG
GGCGCGGACG GATTCCAGGT GCTGCAGGTC ATGTCTGAGG AACGCCCCGG AACGCCTGTC
ATCATGCTCA CGGCCCGTGG AGAGGAGGAA GACCGCGTGC AGGGGCTCAA GCTGGGGGCG
GACGACTATA TTGTCAAACC GTTCAGCATC CGGGAACTGC TCGCCCGCAT CGAGGCCGTT
CTGCGCAGGT CTCCGGAACG GCCGCGCCAG CTCCGGGAAA TCAGGATCCC CGGCGCCACC
CTGGACAGCG CCAACCGCCT GATCACCTTT AAAGACGGGA GGGAAACCTC CCTGACCGCG
CGGGAATTCG AATTCCTCAC CTATATGGCC ACCCACCCCA ACCGCGTTAT CACGAGGGAC
GAACTGCTCC GGCGCGTATG GGACGTGGAC CCGCGCCTGA CGGATACGCG CTCCGTGGAA
ATGACCGTCA TGCGTCTCCG GGACAAGCTC GGGGCCGCCT CCGCCTCCCC CCTGGAGACG
CTTAGAAGCC AGGGCTACCG CTGGAATTCA TCCTTCGTTT CCTGA
|
|---|
| Protein sequence | MSDSAYTILI AEDDDSIRHA LTDVLTASGY EVLALEEGLA AIHAVRERNF DLALLDVAMP
GADGFQVLQV MSEERPGTPV IMLTARGEEE DRVQGLKLGA DDYIVKPFSI RELLARIEAV
LRRSPERPRQ LREIRIPGAT LDSANRLITF KDGRETSLTA REFEFLTYMA THPNRVITRD
ELLRRVWDVD PRLTDTRSVE MTVMRLRDKL GAASASPLET LRSQGYRWNS SFVS
|
|---|
| |