More than 300 homologs were found in PanDaTox collection
for query gene CHU_1040 on replicon NC_008255
Organism: Cytophaga hutchinsonii ATCC 33406



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_3042  response regulator receiver protein  59.66 
 
 
524 aa  638    Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0742856 
 
 
-
 
NC_013037  Dfer_5047  response regulator receiver protein  58.91 
 
 
521 aa  644    Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1040  two-component response regulator  100 
 
 
518 aa  1058    Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.429651  normal 
 
 
-
 
NC_013061  Phep_4282  PglZ domain protein  54.3 
 
 
518 aa  593  1e-168  Pedobacter heparinus DSM 2366  Bacteria  normal  0.769544  normal 
 
 
-
 
NC_013132  Cpin_1282  response regulator receiver protein  52.84 
 
 
517 aa  582  1.0000000000000001e-165  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00300616  normal 
 
 
-
 
NC_014230  CA2559_08151  response regulator  53.77 
 
 
516 aa  581  1e-164  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2906  response regulator receiver protein  52.51 
 
 
517 aa  557  1e-157  Flavobacterium johnsoniae UW101  Bacteria  normal  0.568683  n/a   
 
 
-
 
NC_002950  PG0928  response regulator  49.71 
 
 
518 aa  516  1.0000000000000001e-145  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.581359 
 
 
-
 
NC_013501  Rmar_2518  response regulator receiver protein  41.51 
 
 
519 aa  470  1.0000000000000001e-131  Rhodothermus marinus DSM 4252  Bacteria  normal  0.487815  n/a   
 
 
-
 
NC_002939  GSU2693  response regulator  33.61 
 
 
128 aa  82.8  0.00000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  32.8 
 
 
450 aa  80.5  0.00000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1760  response regulator receiver modulated diguanylate cyclase  33.59 
 
 
473 aa  78.6  0.0000000000003  Geobacter lovleyi SZ  Bacteria  normal  0.554911  n/a   
 
 
-
 
NC_011725  BCB4264_A3169  regulatory protein VanR  34.71 
 
 
229 aa  78.2  0.0000000000004  Bacillus cereus B4264  Bacteria  normal  0.16404  n/a   
 
 
-
 
NC_009523  RoseRS_2694  putative PAS/PAC sensor protein  31.36 
 
 
969 aa  77.8  0.0000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.0176534  normal 
 
 
-
 
NC_002939  GSU0842  sensory box histidine kinase/response regulator  32.26 
 
 
787 aa  77.4  0.0000000000006  Geobacter sulfurreducens PCA  Bacteria  normal  0.220519  n/a   
 
 
-
 
NC_011146  Gbem_0010  multi-sensor signal transduction histidine kinase  29.94 
 
 
511 aa  76.3  0.000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  33.6 
 
 
444 aa  76.3  0.000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  25.99 
 
 
243 aa  75.9  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  33.06 
 
 
151 aa  76.6  0.000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0009  multi-sensor signal transduction histidine kinase  29.94 
 
 
509 aa  75.9  0.000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.923259 
 
 
-
 
NC_007484  Noc_0064  hypothetical protein  20.73 
 
 
664 aa  75.9  0.000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.834835  n/a   
 
 
-
 
NC_013522  Taci_1491  PglZ domain protein  22.75 
 
 
668 aa  75.5  0.000000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  32.33 
 
 
391 aa  75.9  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3177  adenylate/guanylate cyclase with GAF and PAS/PAC sensors  30.51 
 
 
971 aa  75.5  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  35.9 
 
 
391 aa  75.5  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  32.8 
 
 
444 aa  75.5  0.000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008578  Acel_0817  hypothetical protein  23.77 
 
 
677 aa  75.5  0.000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  0.062184  normal  0.168506 
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  33.33 
 
 
473 aa  75.1  0.000000000003  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  34.96 
 
 
471 aa  75.1  0.000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2223  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  29.75 
 
 
725 aa  74.3  0.000000000004  Marinobacter aquaeolei VT8  Bacteria  normal  0.847933  n/a   
 
 
-
 
NC_009767  Rcas_2795  two component transcriptional regulator  31.09 
 
 
266 aa  74.3  0.000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  32.79 
 
 
234 aa  74.3  0.000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_007204  Psyc_1813  putative hybrid two-component sensor and regulatory protein  36.67 
 
 
2284 aa  74.3  0.000000000005  Psychrobacter arcticus 273-4  Bacteria  normal  0.409027  normal 
 
 
-
 
NC_011831  Cagg_1124  PglZ domain protein  23.64 
 
 
677 aa  74.3  0.000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.0434385 
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  26.88 
 
 
224 aa  74.3  0.000000000005  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_011769  DvMF_1988  response regulator receiver protein  33.62 
 
 
119 aa  73.9  0.000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_0176  two-component response regulator AlgB  31.4 
 
 
450 aa  73.9  0.000000000006  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  27.78 
 
 
448 aa  73.9  0.000000000007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0499  two component transcriptional regulator  32.76 
 
 
223 aa  73.6  0.000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  31.97 
 
 
234 aa  73.9  0.000000000007  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009708  YpsIP31758_2820  transcriptional regulatory protein ZraR  26.82 
 
 
454 aa  73.9  0.000000000007  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  28.91 
 
 
157 aa  73.9  0.000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2907  two component, sigma54 specific, Fis family transcriptional regulator  26.82 
 
 
454 aa  73.6  0.000000000009  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1406  response regulator  32.45 
 
 
351 aa  73.6  0.000000000009  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0133  two component, sigma54 specific, transcriptional regulator, Fis family  31.67 
 
 
448 aa  72.8  0.00000000001  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0614  response regulator receiver protein  38.14 
 
 
121 aa  72.8  0.00000000001  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0334  alginate biosynthesis transcriptional regulatory protein AlgB  31.67 
 
 
448 aa  73.2  0.00000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.368066  n/a   
 
 
-
 
NC_010322  PputGB1_0148  two component, sigma54 specific, Fis family transcriptional regulator  31.67 
 
 
448 aa  73.2  0.00000000001  Pseudomonas putida GB-1  Bacteria  normal  normal  0.837927 
 
 
-
 
NC_007005  Psyr_0263  helix-turn-helix, Fis-type  31.67 
 
 
448 aa  73.2  0.00000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  30.77 
 
 
228 aa  73.2  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  34.38 
 
 
470 aa  72.8  0.00000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_010501  PputW619_5095  two component, sigma54 specific, Fis family transcriptional regulator  31.67 
 
 
448 aa  73.2  0.00000000001  Pseudomonas putida W619  Bacteria  normal  normal  0.262214 
 
 
-
 
NC_008751  Dvul_0173  response regulator receiver protein  31.67 
 
 
121 aa  72.8  0.00000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  31.43 
 
 
474 aa  73.2  0.00000000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_008009  Acid345_4562  two component transcriptional regulator  30.17 
 
 
247 aa  73.2  0.00000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.488322  normal  0.0982939 
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  25.81 
 
 
458 aa  73.2  0.00000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  36.97 
 
 
231 aa  72.8  0.00000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  31.62 
 
 
221 aa  72.8  0.00000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1088  two component transcriptional regulator  29.41 
 
 
264 aa  73.2  0.00000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.237646 
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  32.8 
 
 
470 aa  72.4  0.00000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_011725  BCB4264_A0623  DNA-binding response regulator  31.9 
 
 
223 aa  72.4  0.00000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  32.52 
 
 
461 aa  72  0.00000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_011772  BCG9842_B4716  DNA-binding response regulator  31.9 
 
 
223 aa  72.4  0.00000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  35.25 
 
 
451 aa  72.4  0.00000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  30.4 
 
 
230 aa  72.4  0.00000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1367  two component transcriptional regulator, winged helix family  32.48 
 
 
230 aa  72.4  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000177207  n/a   
 
 
-
 
NC_009943  Dole_1350  response regulator receiver protein  31.54 
 
 
147 aa  72.4  0.00000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00189482  n/a   
 
 
-
 
NC_007492  Pfl01_0046  two-component response regulator AlgB  31.67 
 
 
448 aa  72.8  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.384971 
 
 
-
 
NC_007969  Pcryo_2096  CheA signal transduction histidine kinases  35 
 
 
2301 aa  72.4  0.00000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  33.61 
 
 
472 aa  72.4  0.00000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0150  two component, sigma54 specific, Fis family transcriptional regulator  31.67 
 
 
448 aa  72.8  0.00000000002  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  31.5 
 
 
471 aa  72.4  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_005945  BAS0554  DNA-binding response regulator  31.9 
 
 
223 aa  72  0.00000000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0496  response regulator  31.9 
 
 
223 aa  71.6  0.00000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0498  response regulator  31.9 
 
 
223 aa  71.6  0.00000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2360  response regulator receiver protein  32.26 
 
 
523 aa  71.6  0.00000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0641  DNA-binding response regulator  31.9 
 
 
223 aa  71.6  0.00000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_2217  two component transcriptional regulator, winged helix family  31.93 
 
 
276 aa  71.6  0.00000000003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00294817  normal 
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  31.67 
 
 
240 aa  71.6  0.00000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_007530  GBAA_0585  DNA-binding response regulator  31.9 
 
 
223 aa  72  0.00000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  34.75 
 
 
469 aa  71.6  0.00000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_002939  GSU0008  sensory box histidine kinase/response regulator  30 
 
 
516 aa  71.6  0.00000000004  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  30.88 
 
 
452 aa  71.2  0.00000000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  31.2 
 
 
229 aa  71.2  0.00000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_012918  GM21_0685  multi-sensor hybrid histidine kinase  30.65 
 
 
770 aa  71.2  0.00000000004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000495863 
 
 
-
 
NC_011146  Gbem_1522  two component, sigma54 specific, transcriptional regulator, Fis family  32.52 
 
 
461 aa  71.2  0.00000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1914  response regulator receiver modulated diguanylate cyclase  26.19 
 
 
459 aa  71.2  0.00000000004  Geobacter metallireducens GS-15  Bacteria  normal  0.943888  hitchhiker  0.00021307 
 
 
-
 
NC_013730  Slin_0751  two component, sigma54 specific, transcriptional regulator, Fis family  32.48 
 
 
490 aa  71.2  0.00000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.664159  normal 
 
 
-
 
NC_013061  Phep_4238  sigma-54 factor interaction domain-containing protein  33.61 
 
 
467 aa  71.2  0.00000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  30.4 
 
 
230 aa  71.2  0.00000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_009656  PSPA7_6282  two-component response regulator AlgB  29.75 
 
 
449 aa  71.2  0.00000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0650  DNA-binding response regulator  31.03 
 
 
223 aa  70.9  0.00000000005  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  30.25 
 
 
229 aa  71.2  0.00000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_011884  Cyan7425_2570  response regulator receiver sensor signal transduction histidine kinase  32.56 
 
 
381 aa  70.9  0.00000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0010  PAS/PAC sensor hybrid histidine kinase  32.5 
 
 
508 aa  70.9  0.00000000005  Geobacter metallireducens GS-15  Bacteria  normal  0.0502065  normal 
 
 
-
 
NC_011658  BCAH187_A0711  DNA-binding response regulator  31.03 
 
 
223 aa  70.9  0.00000000005  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2625  two component transcriptional regulator  39.67 
 
 
232 aa  71.2  0.00000000005  Marinomonas sp. MWYL1  Bacteria  normal  unclonable  0.00000000000561273 
 
 
-
 
NC_008261  CPF_0459  DNA-binding response regulator  31.91 
 
 
234 aa  70.9  0.00000000005  Clostridium perfringens ATCC 13124  Bacteria  normal  0.025631  n/a   
 
 
-
 
NC_008463  PA14_72380  two-component response regulator AlgB  30 
 
 
449 aa  70.9  0.00000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.415261  normal 
 
 
-
 
NC_013501  Rmar_0819  two component transcriptional regulator, winged helix family  30.25 
 
 
246 aa  70.9  0.00000000006  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
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