More than 300 homologs were found in PanDaTox collection
for query gene Phep_4282 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_1282  response regulator receiver protein  57.53 
 
 
517 aa  639    Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00300616  normal 
 
 
-
 
NC_013061  Phep_4282  PglZ domain protein  100 
 
 
518 aa  1072    Pedobacter heparinus DSM 2366  Bacteria  normal  0.769544  normal 
 
 
-
 
NC_013037  Dfer_5047  response regulator receiver protein  58.79 
 
 
521 aa  635    Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3042  response regulator receiver protein  57.33 
 
 
524 aa  613  9.999999999999999e-175  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0742856 
 
 
-
 
NC_009441  Fjoh_2906  response regulator receiver protein  55.21 
 
 
517 aa  600  1e-170  Flavobacterium johnsoniae UW101  Bacteria  normal  0.568683  n/a   
 
 
-
 
NC_014230  CA2559_08151  response regulator  54.35 
 
 
516 aa  599  1e-170  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1040  two-component response regulator  54.3 
 
 
518 aa  593  1e-168  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.429651  normal 
 
 
-
 
NC_002950  PG0928  response regulator  55.51 
 
 
518 aa  565  1e-160  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.581359 
 
 
-
 
NC_013501  Rmar_2518  response regulator receiver protein  46.87 
 
 
519 aa  506  9.999999999999999e-143  Rhodothermus marinus DSM 4252  Bacteria  normal  0.487815  n/a   
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  34.65 
 
 
470 aa  84  0.000000000000006  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_007498  Pcar_1042  two component signal transduction response regulator  27.39 
 
 
465 aa  83.6  0.000000000000009  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.472622  n/a   
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  33.05 
 
 
236 aa  83.2  0.00000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  37.29 
 
 
472 aa  82  0.00000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0080  response regulator receiver modulated metal dependent phosphohydrolase  33.6 
 
 
357 aa  81.3  0.00000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4270  response regulator receiver modulated metal dependent phosphohydrolase  38.33 
 
 
361 aa  80.5  0.00000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  33.86 
 
 
470 aa  80.5  0.00000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_012918  GM21_0009  multi-sensor signal transduction histidine kinase  30.23 
 
 
509 aa  80.5  0.00000000000007  Geobacter sp. M21  Bacteria  n/a    normal  0.923259 
 
 
-
 
NC_008609  Ppro_3046  response regulator receiver modulated metal dependent phosphohydrolase  35 
 
 
365 aa  80.5  0.00000000000008  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0429754  n/a   
 
 
-
 
NC_011146  Gbem_0010  multi-sensor signal transduction histidine kinase  30.23 
 
 
511 aa  80.1  0.00000000000008  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  37.39 
 
 
231 aa  79.3  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  33.9 
 
 
234 aa  79.7  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  41.03 
 
 
231 aa  79.7  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2811  multi-sensor signal transduction histidine kinase  30.6 
 
 
498 aa  79  0.0000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.782124  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  33.05 
 
 
234 aa  79  0.0000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2067  two component transcriptional regulator, winged helix family  38.83 
 
 
233 aa  79  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000016314  n/a   
 
 
-
 
NC_008554  Sfum_0827  two component, sigma54 specific, Fis family transcriptional regulator  33.09 
 
 
447 aa  79  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  33.04 
 
 
235 aa  78.2  0.0000000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0085  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.15 
 
 
738 aa  78.6  0.0000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.127866 
 
 
-
 
NC_012918  GM21_0063  response regulator receiver modulated metal dependent phosphohydrolase  33.6 
 
 
357 aa  78.6  0.0000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.56416e-22 
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  36.52 
 
 
231 aa  77.8  0.0000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  32.48 
 
 
485 aa  76.6  0.0000000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1367  two component transcriptional regulator, winged helix family  38.79 
 
 
230 aa  76.3  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000177207  n/a   
 
 
-
 
NC_009784  VIBHAR_06112  transcriptional regulatory protein CpxR  35.2 
 
 
252 aa  76.3  0.000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013061  Phep_1345  response regulator receiver  32.52 
 
 
227 aa  75.5  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.71904 
 
 
-
 
NC_009441  Fjoh_3924  response regulator receiver protein  33.61 
 
 
121 aa  75.5  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.405001  n/a   
 
 
-
 
NC_010814  Glov_1760  response regulator receiver modulated diguanylate cyclase  26.46 
 
 
473 aa  75.9  0.000000000002  Geobacter lovleyi SZ  Bacteria  normal  0.554911  n/a   
 
 
-
 
NC_008740  Maqu_2223  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  29.37 
 
 
725 aa  75.1  0.000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  0.847933  n/a   
 
 
-
 
NC_008009  Acid345_4134  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
503 aa  75.1  0.000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.518236  normal  0.980065 
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  32.2 
 
 
226 aa  75.1  0.000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2693  response regulator  36.21 
 
 
128 aa  74.3  0.000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  33.58 
 
 
237 aa  74.3  0.000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal 
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  32.79 
 
 
228 aa  74.3  0.000000000005  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_009523  RoseRS_1088  two component transcriptional regulator  32.74 
 
 
264 aa  74.3  0.000000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.237646 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  30.51 
 
 
226 aa  74.3  0.000000000005  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_011831  Cagg_2217  two component transcriptional regulator, winged helix family  30.89 
 
 
276 aa  74.3  0.000000000005  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00294817  normal 
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  33.05 
 
 
469 aa  73.9  0.000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  30.4 
 
 
471 aa  74.3  0.000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_009483  Gura_0009  multi-sensor signal transduction histidine kinase  32.39 
 
 
508 aa  73.6  0.000000000008  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1701  two component transcriptional regulator, winged helix family  35.43 
 
 
236 aa  73.6  0.000000000009  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  35.11 
 
 
444 aa  73.2  0.00000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3391  two component transcriptional regulator  33.08 
 
 
227 aa  73.2  0.00000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.141218  n/a   
 
 
-
 
NC_002939  GSU0842  sensory box histidine kinase/response regulator  33.33 
 
 
787 aa  72.4  0.00000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.220519  n/a   
 
 
-
 
NC_012669  Bcav_3778  two component transcriptional regulator, winged helix family  27.5 
 
 
232 aa  72.4  0.00000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0820994  normal 
 
 
-
 
NC_003912  CJE1664  DNA-binding response regulator  32.04 
 
 
226 aa  72.4  0.00000000002  Campylobacter jejuni RM1221  Bacteria  normal  0.690265  n/a   
 
 
-
 
NC_008639  Cpha266_0880  two component transcriptional regulator  30.2 
 
 
236 aa  72.4  0.00000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1350  response regulator receiver protein  34.38 
 
 
147 aa  72.4  0.00000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00189482  n/a   
 
 
-
 
NC_013165  Shel_00330  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  35.04 
 
 
240 aa  72.4  0.00000000002  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.00972196  normal 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  30.71 
 
 
442 aa  72.4  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_009767  Rcas_2795  two component transcriptional regulator  32.74 
 
 
266 aa  72  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_1309  multi-sensor signal transduction histidine kinase  28.75 
 
 
472 aa  72.8  0.00000000002  Methanospirillum hungatei JF-1  Archaea  normal  0.974547  normal  0.0144544 
 
 
-
 
NC_009012  Cthe_1408  two component transcriptional regulator  35.54 
 
 
232 aa  72.8  0.00000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  30.53 
 
 
230 aa  72.4  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  31.07 
 
 
233 aa  72.4  0.00000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3268  two component, sigma54 specific, Fis family transcriptional regulator  32.82 
 
 
483 aa  72  0.00000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.474695  normal 
 
 
-
 
NC_009664  Krad_0896  two component transcriptional regulator, winged helix family  34.75 
 
 
226 aa  72.8  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.232326  hitchhiker  0.00518822 
 
 
-
 
NC_008609  Ppro_3480  response regulator receiver protein  36.22 
 
 
228 aa  71.6  0.00000000003  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000540997  n/a   
 
 
-
 
NC_010001  Cphy_1679  two component transcriptional regulator  30.16 
 
 
224 aa  71.6  0.00000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_05730  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  32.14 
 
 
242 aa  71.6  0.00000000003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.587783  normal 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  32.85 
 
 
219 aa  71.6  0.00000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  31.36 
 
 
225 aa  71.2  0.00000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0657  two component transcriptional regulator, winged helix family  33.06 
 
 
235 aa  71.2  0.00000000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.118815  hitchhiker  0.000311431 
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  31.15 
 
 
469 aa  71.2  0.00000000004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  30.51 
 
 
228 aa  71.2  0.00000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2720  multi-sensor signal transduction histidine kinase  36.27 
 
 
657 aa  71.2  0.00000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.312815 
 
 
-
 
NC_008699  Noca_1748  response regulator receiver  32.48 
 
 
123 aa  71.2  0.00000000004  Nocardioides sp. JS614  Bacteria  normal  0.122601  n/a   
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  34.31 
 
 
235 aa  71.2  0.00000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  29.5 
 
 
466 aa  71.2  0.00000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  30.95 
 
 
456 aa  71.2  0.00000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  31.5 
 
 
444 aa  71.2  0.00000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  32.82 
 
 
450 aa  71.2  0.00000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  28.31 
 
 
448 aa  70.9  0.00000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2762  PAS sensor protein  31.4 
 
 
1135 aa  71.2  0.00000000005  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.449168  n/a   
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  33.59 
 
 
444 aa  70.9  0.00000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_4198  two component transcriptional regulator, winged helix family  31.2 
 
 
226 aa  70.9  0.00000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  31.62 
 
 
231 aa  70.9  0.00000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_013165  Shel_11290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  31.09 
 
 
234 aa  70.5  0.00000000006  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0758  response regulator receiver protein  33.87 
 
 
132 aa  70.9  0.00000000006  Geobacter sp. M21  Bacteria  n/a    normal  0.0540632 
 
 
-
 
NC_009523  RoseRS_4049  two component transcriptional regulator  33.33 
 
 
229 aa  70.9  0.00000000006  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  34.19 
 
 
236 aa  70.9  0.00000000006  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_008609  Ppro_1378  response regulator receiver modulated metal dependent phosphohydrolase  33.33 
 
 
348 aa  70.9  0.00000000006  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00581699  n/a   
 
 
-
 
NC_008576  Mmc1_1796  PAS/PAC sensor hybrid histidine kinase  35.71 
 
 
871 aa  70.5  0.00000000006  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000183002  normal 
 
 
-
 
NC_013525  Tter_1135  two component transcriptional regulator, winged helix family  30.83 
 
 
227 aa  70.5  0.00000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_1730  multi-sensor hybrid histidine kinase  26.53 
 
 
833 aa  70.5  0.00000000007  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0791  response regulator receiver domain-containing protein  31.62 
 
 
125 aa  70.5  0.00000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00778943 
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  30.51 
 
 
227 aa  70.5  0.00000000007  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_002939  GSU1891  response regulator  33.87 
 
 
379 aa  70.5  0.00000000008  Geobacter sulfurreducens PCA  Bacteria  normal  0.750204  n/a   
 
 
-
 
NC_008639  Cpha266_1834  multi-sensor signal transduction histidine kinase  31.71 
 
 
681 aa  70.5  0.00000000008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  29.66 
 
 
240 aa  70.5  0.00000000008  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_008228  Patl_2301  two component transcriptional regulator  37.29 
 
 
244 aa  70.1  0.00000000008  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00025805  n/a   
 
 
-
 
NC_009720  Xaut_2427  response regulator receiver protein  31.09 
 
 
159 aa  70.5  0.00000000008  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.468058 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>