| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0334 |
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| Symbol | algB |
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| ID | 1181943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 363589 |
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| End bp | 364935 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391703 |
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| Product | alginate biosynthesis transcriptional regulatory protein AlgB |
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| Protein accession | NP_790184 |
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| Protein GI | 28867565 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.368066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGCAG CCACTGAGAA TCAGGGCCGT ATTCTGCTTG TGGACGATGA GTCCGCCATC
CTCCGCACCT TCCGGTACTG TCTGGAAGAC GAAGGTTATA GTGTCGCCAC TGCCAACAGC
GCAGCGCAGG CCGACACGCT CATGCAACGC CAGGTGTTCG ACCTGTGCTT CCTTGATTTG
CGTCTGGGAG AAGACAACGG CCTCGATGTG CTGGCGCAGA TGCGCATTCA GGCGCCGTGG
ATGCGCGTGG TGATCGTGAC TGCGCACTCG GCGGTGGATA CCGCTGTCGA TGCCATTCAG
GCAGGTGCAG CCGACTATCT GGTCAAACCC TGCAGCCCTG ACCAATTGCG CCTGGCGACC
GCCAAGCAGC TTGAAGTCCG TCAGCTGTCT GCACGCCTCG AGGCGCTCGA AGGCGAAGTT
CGCAAGCCCA AGGACGGACT GGATTCCCAC AGCCCTTCAA TGATGGCCAT TCTGGAAACA
GCCCGTCAGG TCGCGGTCAC CGATGCCAAC ATCCTGATTC TGGGTGAGTC GGGCACGGGT
AAGGGCGAAC TGGCTCGGGC GATTCATGGC TGGAGCAAGC GCGCCAAGAA GTCCTGCGTC
ACGATCAACT GCCCATCGCT CACCGCAGAG CTGATGGAAA GCGAATTGTT CGGTCACAGC
CGCGGGGCCT TCACCGGTGC CAGCGAAAGC ACGCTGGGGC GCGTCAATCA GGCGGACGGC
GGTACGTTGT TTCTCGACGA GATCGGTGAC TTTCCGCTGA CGCTGCAGCC CAAGCTGCTG
CGCTTTATTC AGGACAAGGA ATACGAGCGC GTTGGCGATC CGGTCACCCG CAGGGCCGAC
GTGCGCATCC TTGCTGCCAC CAACCTCAAT CTGGAGGACA TGGTGCGCAG CGGACGCTTC
CGCGAAGACT TGCTGTACCG CCTGAACGTC ATCACCCTGC ATTTGCCTGC CTTGCGTGAG
CGCAGCGAAG ACATTCTGAC CCTGGCGGAC CGCTTTCTGG CCCGCTTCGT CAAAGAGTAC
GCCCGCCCGG CACGGGGTTT CAGCGAAGAA GCCCGCGCCG CGCTGCTCAA CTACCGCTGG
CCGGGCAACA TTCGTGAGCT GCGCAACGTG ATCGAACGCG CCAGCATCAT CTGCCCGCAG
GAGCGTGTAG AGGTCAGCCA TCTGGGCATG GCCGAGCAAC CGGCGAACAA CGCGCCGCGC
GTCGGGGCCG CTCTGAGTCT GGACGAGCTG GAAAAAGCGC ACATCGGTGC CGTGCTGGCG
ACCAGCGAAA CCCTGGATCA GGCCGCCAAG ACGCTGGGTA TCGATGCTTC GACGCTTTAC
CGCAAACGCA AACAGTACAA CCTATGA
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| Protein sequence | MEAATENQGR ILLVDDESAI LRTFRYCLED EGYSVATANS AAQADTLMQR QVFDLCFLDL
RLGEDNGLDV LAQMRIQAPW MRVVIVTAHS AVDTAVDAIQ AGAADYLVKP CSPDQLRLAT
AKQLEVRQLS ARLEALEGEV RKPKDGLDSH SPSMMAILET ARQVAVTDAN ILILGESGTG
KGELARAIHG WSKRAKKSCV TINCPSLTAE LMESELFGHS RGAFTGASES TLGRVNQADG
GTLFLDEIGD FPLTLQPKLL RFIQDKEYER VGDPVTRRAD VRILAATNLN LEDMVRSGRF
REDLLYRLNV ITLHLPALRE RSEDILTLAD RFLARFVKEY ARPARGFSEE ARAALLNYRW
PGNIRELRNV IERASIICPQ ERVEVSHLGM AEQPANNAPR VGAALSLDEL EKAHIGAVLA
TSETLDQAAK TLGIDASTLY RKRKQYNL
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