| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1293 |
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| Symbol | |
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| ID | 7271153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | + |
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| Start bp | 1322221 |
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| End bp | 1326018 |
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| Gene Length | 3798 bp |
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| Protein Length | 1265 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643569927 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_002466350 |
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| Protein GI | 219851918 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.307468 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCAGC TGTATCACAT TCTCTATGTC GATGACGAGC CCGCCCTGCT CGATATAACC
AGGATATTTC TGGAGAACGG AGGGGTTTTT TCTGTCGACT GCGCCATGTC CGGAAGTGAA
GCTCTCTCCC GGATCGCTGC CGGGAATTAC GATGCAGTAG TCTCGGATTA CCAGATGCCG
GGGATGGACG GGATCACGCT CTTGAAGAAG GTGCGTGAAA CCGATAAAAC CCTCCCGTTC
ATCCTTTTTA CCGGCAAGGG CAGGGAAGAG GTGGTGATCG AGGCCATCAA CAGCGGTGTG
GATTTTTACC TCCAGAAAGG GGGTGAACCG AAGTCACAGT ATGCCGAACT TTCCCATAAG
ATCTGTACCG CGATAGCACG GCACACCTAT GAGAATGCAC TGAAAGAGAG CGAAGAGCAG
TACCGGAACC TGGTTGAGAC CACAGGAACC GGTTATGTTA TCGTTGATAA AGACGGACGG
GTCACGACGG CAAATGATGA ATATCTCCGG TTGACCGGCC GGTCAAGCTT TGCTGAAATC
GAAGGAAGGC CGGTTACCGA CTGGACTGCC CCCTATGACC TTGAGAGGAA TGCACGGGAA
ATTGAGCATA TCTTCGGGAC AGGACAGGTA CGGGGTCTTG AGATCGATTA CCAGAGACCG
GACGGGACCT TTCAACCAGT AGAGATCAAC GCCTCGGTAG TTCAGTCGGG TTCGGGGCAG
ATCGTTCTGA CCCTGTGCCG GGATATTGCA GAACGCAAAC GGACTGAACG GGAACTGGAA
AAGAAAAGTG AGGAGTTGAA TGCCTCCTAC GATCAGCTGA CCGCTTCCCA TGCACTGCTC
CGACAGACCA TCGACGAATT AAGCAGGAGC GAAGAGGCCC TGAAGTCGAG CGAGGAACGG
GTCCGGCAGA AACTCGAAAG GCTCCTCTCC CCCACGGCAG AAAGTGGGAA CCTGGACCTC
GAAGAGATCA TCGATACGCA GGAGATCCAG TCGATGATGG ATGACTTCTA TGCTATCACG
CATATCGGTA TTGGGATTAT TGATCGCAGG GGAAAGGTCC TGATCGGGAC CGGGTGGCAG
ACTATCTGTA CACACTTTCA CCGGTCAAAT CCGGAAACCT GTGAAAATTG TCTTGAAAGC
GATATCTATC TCACGGAAGG GGTAGCACCA GGGACGATCC GGAGATACAA ATGCAAAAAT
AATATGTGGG ATCTTGTCAC CCCGATCATC GTCGGTGGAA ACCACGTGGG CAATCTCTTT
CTTGGCCAGT TCCTGTATGA TGATGAATCC CCTGATATTA AGCTCTTCCG TGCACAGGCA
GTACGGTATG GATTTGATGA AGATGCCTAC CTTGCCGCTC TCGATCTGGT TCCCCGGTGG
AACAGGAAGA CCGTCGACAC GGTCATGGCA TTTTATGCCA GGTTCGCCCG GATGATCTCC
ACGCTCAGTT TCAGCAACAT CGCGCTGGCC CGGACAGTGA GCGAGCGGGA CAGACTGCTT
TATTCCCTGC AGGAGAGCGA GCGGAAGTAC CGCAACCTGT ACCGGTTTGC GCAGGTAGGA
TTGTTCGAGA CAAGCCTCAA AGACGGTACA GTTGTTGCAT GCAACGAGGT GTATGCCACC
CTTGCAGGGT ATTTATCGGT TGAAGATGCA ATCGGAAAGG ACATTGTCCA CCTGTATGAG
AATCCCGACG ACCGCAAAGA GGTGATCCGT CTTCTCCGTG AGCAGGGATC TATCGACGAT
CATATCGTTC AGTTCAAAAA CCATCTGACC GGGCGTCCGT TCTGGGCGCA GTTCTCCGCC
CGGATCAACC GGGAAAAGGA TGAAGCGGAA GGCACCATCG TCGACATCAC TGAACAGAAA
AGGATTGAAT CGGAGCTGGA ACGAAAGAAC CAGGAACTGA TGGAATCCTA TGAACACCTG
ACCGTGTCAG AGGAGGAACT TAAAAGCCAG TTCGACGCCC TTGTTGATAC TGAACGGACG
CTCCGGATAA ACGAAGAACG GTTGCTGATG GCGCAGGATA TCAGTCACTC AGGCAGCTGG
GAATATCACG TCGTGACCGA TATAATCTGG GGGTCAGCTG AAGGGCTCCG CCTCTTTGGT
TTCCCCCCGA TAGCCGGCGA TTTCCCCCTC GATGAGATCG AAGGATGCAT TCCGGAGCGT
GAACGGGTCC ATCAGGCCCT CGTAGACCTG ATCGATGCAG GGAGAGAGTA TAATCTTGAA
TACGCCATCA ACCCCGCAGA CGGTTCCCCC CAAAGGTTCA TTCATTCGAT CGCCCGGCTC
GAAAAGGATG CGCAGGGCAG GCCGCATCGG GTGATGGGTG TATTACAGGA TATCACCGAA
CGCAAGCAGA CCGAGCTCAA ACTGAGAGAT GCGCTCATCG AATCAGAGCG CTTTCGCGAG
GCGCTGGATC ATGTTTCCGC CTATATCTAC ATGAAGGACC TGCAGTCCCG ATACGTGTAT
GCCAACCGGC CAACGCTGGA ACTGTTTGGT TGTTCTGCCG GGGAACTGGC GGGGTGCGAC
GATACTTGCT ATTTCCCGCC CGACACCGTC AAGCATCTGC AGGAAGTAGA TTCCCACGTC
TTCGCGGGTG AACCTGTGTC TGAAGAGATT GAGGTTGCCG ATACCGGGTC CGGCCGGTGC
GTCGTCTATT GGGAAGTCAA GACTCCTATC TTTGTGGACA CCGAGCATAC AATGGTTTCA
GGTTTGCTGG GCATTTCAAC AGACATCACC GAACGGAAGC GAGCCGAGGA GGCGTTTCGG
GAGAGTGAAG AGCGGTTCAG GGCGATCTTC AACGCTTCGT TTCAGTTCAT CGGATTGATG
AAGACGGATG GCACCCTGAT AGAAGCAAAT CAGTCAGCAT TGGACTTTAC CGGGATAACA
TCCGATCAGA TAATCAATAA ACCGCTCTGG GAGTCTCACT GGTGGCAGGG AGATGAAGAG
CAGGTACGTC ACCTGAAGGA TGCAATTGCC CGGGCTGCGG CAGGGCAGTT TGTGCGGTAC
GAGGTGGAAT TACAGGGAGC CGGGGAGACC CGGGGGCTCT TTGACTTCTC GATCAAGCCG
GTTTTTGCCC CGAATGGCAC TGTTGTGCTG CTCGTCGCCG AAGGACGCGA CATCTCTTCC
CGCAAACAGG CGGAAGATGC TCTCGTGAAG GTGAACCGGA AACTGAACAT TCTCAACGAT
CTGACAAGGA AGGATCTGAC GAGTCGAATC TTTGTCATGA AGAGTTTTCT TGAACTTGCA
GAACATTCTG CAGTCGGGCA GACTGGTGTT CTTCAGTACC TGCAAAAAAT TGAACCGGTC
ATGCAGTCGA TCAACGAGAT AACGGAATTT ACCAGGGATT ACCAGAATAT GGGGGAAACC
CCCCCGACCT GGCAGAATGT CAAGCTGACG ATGCTGTATG GGATCTCCCA CATCTTCCTT
GGTGATATAA GCCACAGCCT CGAAACTGAG AACCTTGAGA TCTTTGCTGA TCCCCTGCTT
GAAAAAGCGT TCCAGGGCCT CTTCGAAAAC ACGATCGAAC ATGGGGGTCA GGTAGGCCAT
ATCCGGGTCT GGTATAAGGA AACCAACAGA GGAGCGGTCA TCTTCTTTGA AAACGATGGA
GCCGGTATTC CGGAGGACCA AAAAGAGCGG ATCTTTTTAC GCGGTGAAGG AACACGTTCG
CCGGTCCGGG GACTCTTCTT TGTCCGGGAG ATCCTCGACC TCACCGGCAT CACGATACAG
GAGACAGGGG ATCCGGTTGG AGGGGTTCGG TTTGAGATCA CCGTGCCACA AGGGGCGTAC
CGGCTTGCCG GTATTTAA
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| Protein sequence | MSQLYHILYV DDEPALLDIT RIFLENGGVF SVDCAMSGSE ALSRIAAGNY DAVVSDYQMP
GMDGITLLKK VRETDKTLPF ILFTGKGREE VVIEAINSGV DFYLQKGGEP KSQYAELSHK
ICTAIARHTY ENALKESEEQ YRNLVETTGT GYVIVDKDGR VTTANDEYLR LTGRSSFAEI
EGRPVTDWTA PYDLERNARE IEHIFGTGQV RGLEIDYQRP DGTFQPVEIN ASVVQSGSGQ
IVLTLCRDIA ERKRTERELE KKSEELNASY DQLTASHALL RQTIDELSRS EEALKSSEER
VRQKLERLLS PTAESGNLDL EEIIDTQEIQ SMMDDFYAIT HIGIGIIDRR GKVLIGTGWQ
TICTHFHRSN PETCENCLES DIYLTEGVAP GTIRRYKCKN NMWDLVTPII VGGNHVGNLF
LGQFLYDDES PDIKLFRAQA VRYGFDEDAY LAALDLVPRW NRKTVDTVMA FYARFARMIS
TLSFSNIALA RTVSERDRLL YSLQESERKY RNLYRFAQVG LFETSLKDGT VVACNEVYAT
LAGYLSVEDA IGKDIVHLYE NPDDRKEVIR LLREQGSIDD HIVQFKNHLT GRPFWAQFSA
RINREKDEAE GTIVDITEQK RIESELERKN QELMESYEHL TVSEEELKSQ FDALVDTERT
LRINEERLLM AQDISHSGSW EYHVVTDIIW GSAEGLRLFG FPPIAGDFPL DEIEGCIPER
ERVHQALVDL IDAGREYNLE YAINPADGSP QRFIHSIARL EKDAQGRPHR VMGVLQDITE
RKQTELKLRD ALIESERFRE ALDHVSAYIY MKDLQSRYVY ANRPTLELFG CSAGELAGCD
DTCYFPPDTV KHLQEVDSHV FAGEPVSEEI EVADTGSGRC VVYWEVKTPI FVDTEHTMVS
GLLGISTDIT ERKRAEEAFR ESEERFRAIF NASFQFIGLM KTDGTLIEAN QSALDFTGIT
SDQIINKPLW ESHWWQGDEE QVRHLKDAIA RAAAGQFVRY EVELQGAGET RGLFDFSIKP
VFAPNGTVVL LVAEGRDISS RKQAEDALVK VNRKLNILND LTRKDLTSRI FVMKSFLELA
EHSAVGQTGV LQYLQKIEPV MQSINEITEF TRDYQNMGET PPTWQNVKLT MLYGISHIFL
GDISHSLETE NLEIFADPLL EKAFQGLFEN TIEHGGQVGH IRVWYKETNR GAVIFFENDG
AGIPEDQKER IFLRGEGTRS PVRGLFFVRE ILDLTGITIQ ETGDPVGGVR FEITVPQGAY
RLAGI
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